Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_I04
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    27   2.3  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    26   7.1  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.1  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   7.1  

>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 550 WARVYRSLGMTDDEIDEHFTGPAFLAWLR 636
           WA+++ + G TDD I +  T  AF  W+R
Sbjct: 243 WAKMFPN-GYTDDNIPDVSTWDAFQIWMR 270


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
 Frame = +2

Query: 362 CRNRSQKSTNLS------FLMIDFATIKTCARRLIHSFGG 463
           C   + KSTNL       FL+ D   +  C +RLI++F G
Sbjct: 63  CSITANKSTNLKHFVRLFFLLGDSERVNLCIKRLIYTFIG 102


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 670 LKSWNDKQREIQDSVID 720
           L+ WND Q+E++D++ D
Sbjct: 370 LQRWNDAQKELKDNIPD 386


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 343 ATLFDSCSIFSSSN*IPIKP 284
           A+ FDSC  F S + IPI+P
Sbjct: 256 ASPFDSCDSFHSGSSIPIEP 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,365,494
Number of Sequences: 5004
Number of extensions: 70593
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)