Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_I04
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1393 - 33204699-33204806,33204927-33205164,33205581-332058...   160   1e-39
01_01_0304 + 2486387-2486724,2486968-2486986                           31   1.0  
04_03_1004 + 21637910-21638269,21638424-21638579,21640108-216402...    30   1.8  
10_01_0182 - 2052037-2052044,2053163-2053748,2055337-2055396           30   2.4  
03_01_0260 - 1999462-1999488,1999748-1999930,2000940-2001146,200...    30   2.4  
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501...    28   7.4  
10_08_0201 + 15746790-15746889,15748726-15748863,15750715-157507...    28   9.7  

>04_04_1393 -
           33204699-33204806,33204927-33205164,33205581-33205825,
           33206229-33206339,33206645-33206743,33207684-33207731,
           33207882-33207999,33208085-33208115,33208700-33208806,
           33209644-33209725,33210010-33210104,33210579-33210664,
           33211074-33211195,33211613-33211824,33212362-33212510,
           33212755-33212982
          Length = 692

 Score =  160 bits (389), Expect = 1e-39
 Identities = 77/199 (38%), Positives = 107/199 (53%), Gaps = 9/199 (4%)
 Frame = +1

Query: 214 DNKDVFSLRTVQGLLHIRATTGVAALWGFNYYLKKYCKSQIAWQ---------VQRXXXX 366
           DN  +F       +L +  T+GV    G ++YLK YC + ++W          V R    
Sbjct: 112 DNHPLFDGEGTPQVL-LLGTSGVEISAGLHWYLKHYCAAHVSWDKTGGAQLSSVPRPGSL 170

Query: 367 XXXXXXXXXXXSNDRFRYYQNVCTASYSFVWWQTNDWVEHVQWMALNGINLALAPVAQEA 546
                          + YYQN  T+SYSF WW    W + + WMAL GINL LA   QEA
Sbjct: 171 PRLPSGGILIQRPVGWSYYQNAVTSSYSFAWWDWERWEKEIDWMALQGINLPLAFTGQEA 230

Query: 547 AWARVYRSLGMTDDEIDEHFTGPAFLAWLRMGNVHGWGGPLLKSWNDKQREIQDSVIDYM 726
            W +V++   ++  ++D+ F GPAFLAW RM N+HGWGGPL +SW D Q  +Q  ++  M
Sbjct: 231 IWQKVFQRYNISKSDLDDFFGGPAFLAWSRMANMHGWGGPLPQSWLDDQLALQKKILSRM 290

Query: 727 YXLGIVSVFPAFNGHVPKA 783
           Y  G+  V PAF+G++P A
Sbjct: 291 YAFGMFPVLPAFSGNIPAA 309


>01_01_0304 + 2486387-2486724,2486968-2486986
          Length = 118

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 630 PSQKRGTGKMLIYFVVRHSEAAIDASPSRFLCNW 529
           P+ +R  GK L+YF      AA+  S +  LC W
Sbjct: 82  PAARRAAGKKLLYFAAPPLLAAVVLSVAALLCKW 115


>04_03_1004 +
           21637910-21638269,21638424-21638579,21640108-21640202,
           21640478-21640505,21640725-21640752,21642353-21642363
          Length = 225

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 671 RSGPPQPCTFPIRSQAKNA-GPVKCSSISSSVIPRLR*TRAQAASCATGAKAKLIPFSA 498
           R  PP+P     R    ++  P + SS SSS  P L  TR +AAS A+   A L PF A
Sbjct: 10  RGPPPRPAGRAQRPPPPHSVAPKRASSSSSSTTPPLLTTR-RAASAASLLLAALPPFPA 67


>10_01_0182 - 2052037-2052044,2053163-2053748,2055337-2055396
          Length = 217

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 436 TASYSFVWWQTNDWVEHVQWMALNGINLALAPVAQEAAWARVYRSLGMTDDEIDEHFTG 612
           T    +V   T +W E  QW+A + +  A    A+E   ARV R+  +  DE+ +   G
Sbjct: 6   TRCMKYVLTATYEWHEE-QWLAKDDVRFADEVAAEELLHARVRRAQRLAVDELLQPHVG 63


>03_01_0260 -
           1999462-1999488,1999748-1999930,2000940-2001146,
           2001895-2002359
          Length = 293

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 771 VTIESREDRYNAKXVHVVDYGILNFSLFVVP*LEEWSTP--AVYIPHTKPSQKRGTG 607
           V + S+E   +A   H V Y + +  L V P  E    P  + + P T+PS   GTG
Sbjct: 216 VVMASKEAALSALQNHSV-YNVFSVPLIVAPVQESGGVPTRSTHTPETRPSNLGGTG 271


>04_03_0897 -
           20646750-20646918,20647927-20648038,20649650-20650108,
           20650237-20650330,20650449-20650525,20650637-20650688,
           20650770-20650927,20651191-20651281,20651465-20652529
          Length = 758

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 677 DLRSGPPQPCTFPIRSQAKNAGPVKCSSISSSVIPRLR*TRAQAASC-ATGAK 522
           D+ +  P P     R Q KN+  +   S+SS ++ R    R+ AA C A G K
Sbjct: 571 DVTTAVPWPGLHQERQQVKNSSSLTEESVSSPILHRHGERRSPAARCFADGMK 623


>10_08_0201 +
           15746790-15746889,15748726-15748863,15750715-15750792,
           15751251-15752632
          Length = 565

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 586 DEIDEHFTGPAFLAWLRMGNVHGWGGPLL 672
           D++++H   P +L W +M     W  PL+
Sbjct: 502 DKLEKHCRHPGWLVWAKMFGYKDWKNPLV 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,172,865
Number of Sequences: 37544
Number of extensions: 475276
Number of successful extensions: 1189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)