Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_I04
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17997| Best HMM Match : No HMM Matches (HMM E-Value=.)             173   1e-43
SB_48144| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-19)            29   4.3  
SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)             28   7.5  

>SB_17997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score =  173 bits (421), Expect = 1e-43
 Identities = 73/126 (57%), Positives = 86/126 (68%)
 Frame = +1

Query: 400 SNDRFRYYQNVCTASYSFVWWQTNDWVEHVQWMALNGINLALAPVAQEAAWARVYRSLGM 579
           S  RFRYYQNVCT SYSFVWW    W   + WMALNGINL LA   QEA W RVY +LG+
Sbjct: 30  SLSRFRYYQNVCTPSYSFVWWNWTRWQREIDWMALNGINLPLAFTGQEAIWQRVYLNLGL 89

Query: 580 TDDEIDEHFTGPAFLAWLRMGNVHGWGGPLLKSWNDKQREIQDSVIDYMYXLGIVSVFPA 759
           T  E+D+HF+GPAFLAW RMGN+HGWGGPL  +W   +  +Q  ++  M   G+  V P 
Sbjct: 90  TQQELDQHFSGPAFLAWERMGNMHGWGGPLPSTWYGMKLNLQHKILAAMRNFGMTPVLPG 149

Query: 760 FNGHVP 777
           F GHVP
Sbjct: 150 FAGHVP 155


>SB_48144| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-19)
          Length = 502

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 259 HIRATTGVAALWGFNYYLKK-YCKSQIAWQVQR 354
           +IR   G+  +W + Y+LKK YC   ++    R
Sbjct: 251 YIRYPWGICLIWNYGYFLKKFYCAQDLSGNSDR 283


>SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)
          Length = 622

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 406 DRFRYYQNVCTASYSFVWWQTNDWVEHVQWM 498
           D FR + N C   Y  +W     W+ HV+W+
Sbjct: 96  DFFRGFWNCCL--YHVIWLYDVSWLYHVRWL 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,768,371
Number of Sequences: 59808
Number of extensions: 551144
Number of successful extensions: 1180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)