Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_H23
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    28   1.3  
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    26   5.0  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    26   5.0  
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |...    26   6.7  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   6.7  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   6.7  

>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 204 ECFRERIAPVSKILFYTSYNNRRLFSEIFRLSQSQ*RNKFS*MCTYPT 347
           ECF +     S +L YT+ NN     E+ +L++S   N  + +C++ T
Sbjct: 688 ECFEKGKDYGSLVLLYTATNNHEGLKELSQLTKSTKINNTAFICSWLT 735


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 216 ERIAPVSKILFYTSYNNRRLFSEIFRLSQ 302
           + +  V++ LF+TS    R+ +EIF L Q
Sbjct: 150 QEVESVTQALFHTSKETARMEAEIFELEQ 178


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 113 IQTMLTRSKKLCPRSSRIFLTGLWWIIR 196
           IQ  LTR  K CP ++ +FL+ L ++ R
Sbjct: 82  IQAYLTRILKYCPATNDVFLSVLIYLDR 109


>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 82  SQILEKLKNVDPNDVDAVKEALSTFFQNISNWTLVDNT 195
           S +   ++N+ P+D   V+ AL T  +   +  LVD T
Sbjct: 150 SSVPSSVENIPPSDQSIVRAALETIQRVTRSLVLVDKT 187


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 307 SSVINSAKCAHILQQVRPSQDKGATSKACWREQMNILCKAANDLVEVIFSNSLNI 471
           S+ INS +   I+Q V   Q KG  S   W + +    K   +L+   F  S+ I
Sbjct: 36  STPINSLELLDIIQAVYDDQKKGEESFVFWEKFLQTYGKQEKNLL-AYFKASIRI 89


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +1

Query: 103 KNVDPNDVDAVKEALS-----TFFQNISNWTLVDNTRWLNALE 216
           K +D N  DAVK  +      +F  +IS+W  + +  W+  L+
Sbjct: 73  KAIDLNKDDAVKSTIKCKQCQSFLTSISSWKDLPSANWMEMLD 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,899
Number of Sequences: 5004
Number of extensions: 57583
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)