Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_H23
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0764 - 7332969-7333870,7334044-7334369,7334712-7335384,733...    32   0.43 
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421...    30   1.7  
01_06_1504 + 37821676-37821778,37821855-37822072,37822713-378232...    28   9.2  

>08_01_0764 -
           7332969-7333870,7334044-7334369,7334712-7335384,
           7336195-7336219
          Length = 641

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
 Frame = +1

Query: 172 NWTLVDNTRWLNALENVLRRFPKFCSTHRTTTEDYLVKFLDSHNH-SSVINSA------K 330
           NW L+ N R   A+    RR    C   R +    +VK  + +   +++INSA      +
Sbjct: 229 NW-LMRNLRKQLAIARESRRVDVLCE--RLSLTHKMVKGSERYRELANIINSAVKILEKE 285

Query: 331 CAHILQQVRPSQDKGATSKACWREQMNILCKAANDLVEVIFSNSLNIYKNND 486
               L QV     +G  ++ C    +  LC  A ++V+   S++L+   NN+
Sbjct: 286 VGCALDQVSAITGRGIVNRLCCGADVQKLCSCALEMVDSTLSSTLDFETNNN 337


>05_05_0034 - 21741148-21741275,21741890-21741928,21742007-21742121,
            21742227-21742292,21743213-21743371,21743573-21743609,
            21743757-21744194,21744735-21744817,21744920-21744956,
            21745146-21745214,21745316-21745407,21745481-21745565,
            21745903-21745982,21746327-21746724,21746813-21747717,
            21747825-21747915,21748617-21750680,21750681-21750749,
            21750850-21751273,21751644-21751763
          Length = 1832

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
 Frame = +1

Query: 112  DPNDVDAVKEALSTFFQNISNWTLVDN--------TRWLNALENVLRRFP--KFCSTHRT 261
            D +++  +K  +  F QN+ N     N        T+ L A+ N     P  K  + HR 
Sbjct: 1587 DTDEIPTIKLNMEAFAQNLENCIKESNKDFQSDDITKALVAISNEAASIPVPKLKNVHRL 1646

Query: 262  TTEDYLVKFLDSHNHSSVINSAKCAHILQQVRPSQDKGATSKACWREQMNILCKAANDLV 441
             TE Y+ +  DSH     +    C +   +++ +++  A    C  +    LC  +N++ 
Sbjct: 1647 RTEHYVYELPDSH----PLMQQSCGYCADELKDTRE--APKPCCNPQTEGGLC--SNEMC 1698

Query: 442  EVIFSNSLNIYK 477
                S   N Y+
Sbjct: 1699 HNCVSERENQYR 1710


>01_06_1504 +
           37821676-37821778,37821855-37822072,37822713-37823242,
           37824040-37824483,37824923-37825616
          Length = 662

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 340 ILQQVRPSQDKGATSKACWREQMNILCKAANDLV 441
           +LQQVR S   GA  ++ W+ +    C   N+L+
Sbjct: 386 VLQQVRKSAGGGAPVRSWWKPRAANACVVVNELM 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,010,577
Number of Sequences: 37544
Number of extensions: 324813
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)