Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_H22
(808 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12612| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_30395| Best HMM Match : zf-C2H2 (HMM E-Value=1.6) 32 0.63
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_54230| Best HMM Match : EGF (HMM E-Value=0) 31 1.1
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 29 5.9
>SB_12612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Frame = +2
Query: 278 KAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNN--------- 430
KAE ++ K FPE++ +L+ LL++ F + V D IPI P + +N
Sbjct: 5 KAEEVVTKFFPERVTELDNLLKSGMFALNKIPKVQADSIIPISHPNSDHSNDILLKKSFL 64
Query: 431 EPNAKRQRLDSSE-LSSNSTIEGTR 502
+P K+++L +SE + + ++G R
Sbjct: 65 QPQNKKRKLSNSEQIEKMAELDGIR 89
>SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1168
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 374 DVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGT-RVYVLPNGSVPCNKPL 547
++ + +N P PTPP++S E A++ LD L T++G + P GS P+
Sbjct: 726 NIDKVVNFPFPTPPSSSALE-TAEKLLLDLGALEERKTVKGNISAVISPLGSAMAKFPV 783
>SB_30395| Best HMM Match : zf-C2H2 (HMM E-Value=1.6)
Length = 755
Score = 31.9 bits (69), Expect = 0.63
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = +2
Query: 380 HQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLI 559
H++ N+ + AT NN+ A S E S+S+ E V V P G +P NK L++ +
Sbjct: 247 HEESNVKVRVEGATGNNDGPA------SQETISSSSSEKVSVSV-PLGCLPKNKTLNEDM 299
Query: 560 HLVKPHIRE 586
+ HI+E
Sbjct: 300 VDIMEHIQE 308
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 31.5 bits (68), Expect = 0.83
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 296 IKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIP---TPPATSNNEPNAKRQRL 457
I+ EK+ K NE +E +N LSD+ +LN I S+++PN K Q+L
Sbjct: 1947 IEEMREKMRKANEEIEKILSKNSKLSDILNELNSGIENILNEETLSDSDPNVKLQKL 2003
>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
Length = 1359
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 404 PTPPATSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLI 559
P P+TS N+P ++RQR SS+ S++S + LP G P +P S L+
Sbjct: 265 PLDPSTSPNKP-SRRQRFHSSD-STSSLGSPQESHALPTGQSP-TRPHSGLL 313
>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1735
Score = 30.3 bits (65), Expect = 1.9
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Frame = +2
Query: 206 KRGNNLLQVV--IMGAV-QDYKDSLK-LKAEHLI-IKGFPEKIVKLNELLETSNFQNRNL 370
KRG +++ ++GAV + Y D L+ L+ E +I + + + + ++ N++
Sbjct: 1331 KRGGRVVKTKDELVGAVNRSYFDWLEALRPEDIIHVVSARSADERCTKGIGFGHYTNKDP 1390
Query: 371 SDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTIEGTR 502
D H L+ P PTPP P K+ ++ L + E TR
Sbjct: 1391 VDKHNPLHNPSPTPPTALLISPLTKQAQMTRGFLETLDLNEDTR 1434
>SB_31736| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +2
Query: 356 QNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLD--SSELSSNSTIEGTRVYV---LPN 520
+ + +DVH +P PP S N+P + Q +D + T T++Y LP
Sbjct: 903 ETQRQTDVHDTQQQHLPPPPIPSPNQPVSTAQYIDQYGDDNDIRKTQRQTKMYTTQQLPP 962
Query: 521 GSVPC-NKPLS 550
+P N+P+S
Sbjct: 963 PPIPSPNQPVS 973
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/93 (19%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +2
Query: 512 LPNGSVPCNKPLSDLIHLVKPHIRELVEDS-NLLKMWISFMIPKIEDGNNFGVSIQEDTL 688
LPN + ++D + P +E E+S + F + D +FG +++ ++
Sbjct: 1004 LPN--ITAISDITDFFKELGPATKEFAEESVKKVCAVYKFALNSSSDFKDFGENMESQSI 1061
Query: 689 AEIQSVESEAAAFFDQISRYFISRAKIVSXVAK 787
A +++V+ + D+I + I+ ++ + K
Sbjct: 1062 AIMKTVKGDVQNALDEIMNFTITVDSLIDEIEK 1094
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,592,174
Number of Sequences: 59808
Number of extensions: 456898
Number of successful extensions: 1284
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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