Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_H21
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.68 
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    28   1.2  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   4.8  
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    26   4.8  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   8.4  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   8.4  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   8.4  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    25   8.4  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 383 RRALQKTTNQSVTVTRAAKEQNFSSTVSLQTKEVSRSSHFKEQS 514
           RR  QK+  +S++ +  ++  NF +T+S   +EV  S   KE S
Sbjct: 21  RRRFQKSQKKSISPSSGSELPNFKTTISQNNEEVKTS--LKEDS 62


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 88  ALAVGVNALTEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKLGD 228
           A   G N +T   KA I + +  L  EC+KE +    DI+  +++ D
Sbjct: 200 ARQTGKNNITVVHKATIMRMADGLFLECAKELAPEYPDIELREEILD 246


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 266 MKHPTKQEFKPLGSPSFLAASMSP*FTLNSLEHSAIRGNDD 144
           +KHPTK + KP+      A ++ P  ++  ++H  +R  DD
Sbjct: 176 LKHPTKPDLKPVS-----AWNLLPNTSMAGIQHLMLRVADD 211


>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 389 ALQKTTNQ-SVTVTRAAKEQNFSSTVSLQTKE 481
           A+Q+ +N+ S+TV  A K ++FSS+V+ Q  E
Sbjct: 97  AVQQPSNELSITVPEAYKLEDFSSSVANQLLE 128


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 499 VRRPRNFLCLQRNSRGEVLLFRS 431
           VR+P +F+C   N RG  L + +
Sbjct: 354 VRKPSSFICTISNDRGSELTYNN 376


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 239 KPLGSPSFLAASMSP*FTLNSLEHSAIRGNDD 144
           KP    SF A+ M+P  +L S  +SAI G +D
Sbjct: 477 KPSVLASFNASIMNPKSSLPSFSNSAILGTND 508


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 279 NHQRKWSFRCSRYY*EEQEISYQRGGL 359
           +H R   +R SR Y   QEISY  G L
Sbjct: 240 SHPRGIHWRDSRSYLLSQEISYSNGNL 266


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = +1

Query: 163 AECSKEFSVNQGDIDAAKKLGDPSGLNSCFVGCFMKKAGIINASGLFDVAATIEKSKKYL 342
           ++ S E+ + + D D  K L +       F   F KKA ++  S        + +S  YL
Sbjct: 18  SDISSEYLLLELDDDLLKTLEENPEEEIVFKSDFDKKASVLCTSDKTYAVRQVVQSNSYL 77

Query: 343 TSEEDLKAFEKLTETC 390
             +E       L +TC
Sbjct: 78  LFDELSPTDWVLNDTC 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,908
Number of Sequences: 5004
Number of extensions: 42850
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)