Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_H21
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016669-5|AAY55870.1|  124|Caenorhabditis elegans Hypothetical ...    32   0.27 
U41104-3|AAK18975.1|  378|Caenorhabditis elegans Hypothetical pr...    29   1.9  
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       29   2.5  
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    29   2.5  
AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical ...    29   2.5  
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    29   2.5  
Z75526-7|CAE17729.1|  325|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF016669-5|AAY55870.1|  124|Caenorhabditis elegans Hypothetical
           protein K10G6.5 protein.
          Length = 124

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 22/60 (36%), Positives = 31/60 (51%)
 Frame = -3

Query: 426 VTVTDWFVVFWSARLR*FFEGFQVLLAGKIFLALLNSSGYIEKTTCVDDSSFLHETSYKA 247
           +  T W+ V W+  L  F   FQ++ A + FLALL  SG I+    +  S  L  T +KA
Sbjct: 55  IETTSWYPVVWTCWLHMFILYFQIMGACE-FLALL--SGLIDCLMVLPLSIILSRTDFKA 111


>U41104-3|AAK18975.1|  378|Caenorhabditis elegans Hypothetical
           protein T12C9.1 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +2

Query: 383 RRALQKTTNQSVTVTRAAKEQNFSSTVSLQTKEVSRSSHFKEQSL*CFNNYLIISKQSLF 562
           R AL K  +++V   R  K  N+   V    K+V+ +S +   S   F+N  I  K+ LF
Sbjct: 137 RIALHKAEDKTVFEKRTPKAVNYKEAVKQGMKDVTLASDWVSWSFDEFSNLPIDQKRILF 196

Query: 563 Y 565
           +
Sbjct: 197 H 197


>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 343  TSEEDLKAFEKLTETCAPENDKPVSDSDKGCERAKLLLD 459
            T E+++ A E+  E    E D    D D+GCE  + +LD
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
            protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 343  TSEEDLKAFEKLTETCAPENDKPVSDSDKGCERAKLLLD 459
            T E+++ A E+  E    E D    D D+GCE  + +LD
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263


>AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical
           protein T22B2.3 protein.
          Length = 385

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 589 FYFYSTNVIKK*LLRYYQVIIETSQALFFKVRRPRNFLC 473
           FY +  N+IK  LL  + +I+ + Q LFF  +    FLC
Sbjct: 282 FYPFLKNIIKFFLLSVFCLILFSMQTLFFPNQNHEFFLC 320


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
            animals transformedinto males protein 2, isoform a
            protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 343  TSEEDLKAFEKLTETCAPENDKPVSDSDKGCERAKLLLD 459
            T E+++ A E+  E    E D    D D+GCE  + +LD
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263


>Z75526-7|CAE17729.1|  325|Caenorhabditis elegans Hypothetical
           protein C06H2.7 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 130 AEITKSSLPLIAECSKEFSVNQGDI 204
           A +T +SLPLI EC  E+  ++ +I
Sbjct: 239 ASVTAASLPLIVECINEWRASRREI 263


>U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical
           protein R04A9.2 protein.
          Length = 1057

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = +1

Query: 100 GVNALTEEQKAEITKSSLPLIAEC--SKEFSVNQGDIDAAK--KLGDPSGLNSCFVGCFM 267
           G NALT E ++E+T+    +  +C  +++F +        K   +  P  +     G F+
Sbjct: 244 GPNALTLENRSELTRIIEAITDQCLHNEKFLLYSSGTFPTKGGDIASPDEVTLIKSG-FV 302

Query: 268 KKAGIINASGLFDVAATIEKSKKYLTSEEDLKAF 369
           K   I++  G+ D   T++ +K     +  L  F
Sbjct: 303 KTTKIVDRDGVPDAIMTVDTTKSPFYKDTSLLKF 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,707
Number of Sequences: 27780
Number of extensions: 243563
Number of successful extensions: 747
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)