Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_H16
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    31   0.20 
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    29   0.60 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.0  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   3.2  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   3.2  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    26   5.6  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   5.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   5.6  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    26   5.6  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   5.6  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   9.7  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 572 NFXRYSLLPTASTRERGRLEVRSALGTVHVICTVVDRFV 456
           NF    ++P  STR+R  + +R   G +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +3

Query: 324  QRPIVINDPD---PFFAQPTVGNGYEPIDNRPYI-VNP 425
            QRP+V+ DPD   P  ++P  GNG    D+ P + VNP
Sbjct: 1158 QRPMVLKDPDHLVPEPSRPHCGNGLVFYDDIPLLEVNP 1195


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +3

Query: 432 DYNPNG-NGYEPIDNGAYYVDRPQG---RPYFKPTPFPG 536
           DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 458  RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 565
            R + ++C  R P  RP  +     PW + +  K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/42 (26%), Positives = 16/42 (38%)
 Frame = +3

Query: 234 PGFXRPVIGQPGYVPISTGPAYVNRPYNRPQRPIVINDPDPF 359
           PGF R        +   T    +  P+N   RP++   P  F
Sbjct: 156 PGFLRDCFPSSNSITTGTASPKLGSPFNHINRPVLDRSPSSF 197


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 282 STGPAYVNRPYNRPQRPIVIN 344
           +T P   N P  RP+RP+V N
Sbjct: 293 ATEPGVSNIPETRPERPVVYN 313


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 348 PDPFFAQPTVGNGYEP-IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 482
           P P  A   + +   P +++ PY+ N   D+N NGN   P+   +Y
Sbjct: 353 PQPASAMKPMASPMLPNVNSMPYLSNG--DHNNNGNTSSPVSRFSY 396


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
 Frame = +3

Query: 273  VPISTGPAYVNRPYN--RPQRPIVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPN 446
            VP    P++ N PY    PQ P+               N Y PI      VNP   Y P+
Sbjct: 945  VPPVQQPSHPN-PYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASSTVNPAHTYKPH 1003

Query: 447  G 449
            G
Sbjct: 1004 G 1004


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 233 SWLXSARNRSTRIRANKYWTSVRKPSLQQTPEANCDQ 343
           S L   R  S R+R+N+    V +P + QTP  N  +
Sbjct: 248 SELLRRRIESARLRSNQLNEPVEQPRVVQTPVTNASE 284


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 429 KDYNPNGNGYEPIDNGAYYVDRPQGRP 509
           K Y  +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 195 NNHPGHVLISNPDPGFXRPVIGQPGYVPISTGPAYVNRP 311
           N  PG+ + SN  P    P +  PG   +S  P+  + P
Sbjct: 198 NVRPGYGMPSNQKPPNFAPGMPAPGPTAVSASPSLQSMP 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,903
Number of Sequences: 5004
Number of extensions: 53770
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)