Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_H16
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    38   0.009
03_06_0471 + 34169562-34169892,34170121-34170347                       36   0.022
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           35   0.066
06_01_0430 - 3058832-3058952,3059590-3059795,3060103-3060294,306...    29   4.4  
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41...    29   4.4  
02_04_0382 - 22501041-22501279,22501717-22501810                       29   4.4  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    28   5.8  
04_03_1022 - 21778315-21779007                                         28   7.6  

>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
 Frame = +3

Query: 228 PDPGFXRPVIGQPGYVPISTGPA-YVNRPYNRPQRPIVINDPDPFFAQPTVGNGYEPIDN 404
           P P +  P  G P   P  + PA +V  PY     P   + P    A+      Y P   
Sbjct: 169 PSPSYALPPAGYPAVPPYQSYPASHVPAPYPTSAYP---HPPPSLLARDVEHAAYPPTST 225

Query: 405 RPYIVNPPKDY--NPNGNGYEPIDNGAYYVDRPQGRPYFKPTP 527
                 PP+ Y   P G  Y P   G  Y  +PQ R  + P P
Sbjct: 226 ----TYPPQPYPPQPQGQTYPPQPQGETYQPQPQ-RETYPPQP 263



 Score = 31.1 bits (67), Expect = 0.82
 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
 Frame = +3

Query: 225 NPDPGFXRPVIGQPGYVPISTGPAYVNRPYN-RPQRPIVINDPDPFFAQPTVGNG-YEPI 398
           +P P      +    Y P ST   Y  +PY  +PQ       P     QP      Y P 
Sbjct: 205 HPPPSLLARDVEHAAYPPTST--TYPPQPYPPQPQGQTYPPQPQGETYQPQPQRETYPPQ 262

Query: 399 DN-RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKP 521
              +PY   P   P    P G  Y P   G  Y   P+G+P + P
Sbjct: 263 PQVQPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 1/106 (0%)
 Frame = +3

Query: 222 SNPDPGFXRPV-IGQPGYVPISTGPAYVNRPYNRPQRPIVINDPDPFFAQPTVGNGYEPI 398
           SN D GF      G PG  P+  G  Y N P   P        P  + + P     Y P 
Sbjct: 11  SNADKGFHGAYPSGYPGAYPLMQG--YPNSPGQYPT-------PGGYPSAPP--GQYPPA 59

Query: 399 DNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 536
              P    PP  Y P+  GY P   GAY       +P + P  +PG
Sbjct: 60  GGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
 Frame = +3

Query: 312 YNRPQRPIVINDPDPFFA----QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---D 470
           Y++P +  ++N   P       QP     Y P  + P  V PP  Y P  +G  P     
Sbjct: 365 YSQPPQSGMVNPSTPLPPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQ 424

Query: 471 NGAYYVDRPQGRPYFKPTPFPGARG 545
           N + Y + P GRP   P P  GA G
Sbjct: 425 NQSMY-EPPVGRPNSGPPPSYGAGG 448


>06_01_0430 -
           3058832-3058952,3059590-3059795,3060103-3060294,
           3061241-3061287,3062233-3062455
          Length = 262

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
 Frame = +3

Query: 249 PVIGQPGYVPISTGPAYVNR--PYNRPQRPIVINDPDPFFAQPTVGNGYEPIDNRPYIVN 422
           P +GQP +   +  P    R  PY+    P V   P P  A  +   G + +    Y + 
Sbjct: 29  PRVGQPSHGVANAPPPEPPRAAPYHHHGPPTVSAAPHPVPASSSTSMGIQVVIKPAYRIT 88

Query: 423 PPKDYNP 443
           PP    P
Sbjct: 89  PPPQLPP 95


>05_01_0060 -
           418559-418577,418655-418738,418857-418966,419467-419577,
           419914-419992,420182-420264,420347-420439,420902-421810
          Length = 495

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 306 RPYNRPQRPIVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPK 431
           R Y R +R  ++ DPD   A+P+  +  E ++ +P +V+ P+
Sbjct: 79  RRYLRKRRSRLLPDPDATTAKPSSSSSSEFVELKPEVVDFPR 120


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +3

Query: 363 AQPTVGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 530
           A+ T  +G  P ++  +   PP     D  P+ + Y+P  +  YY D P    Y+ P P 
Sbjct: 28  AEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPS 86

Query: 531 PGARGG 548
           P   GG
Sbjct: 87  PYYGGG 92


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 24/79 (30%), Positives = 30/79 (37%)
 Frame = +3

Query: 297 YVNRPYNRPQRPIVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNG 476
           Y + P   P  P +   P P    P+      P  + P IV  P  Y P+   YEP    
Sbjct: 605 YPSPPEVVPSPPKITPYPSPPEVTPSPPE-ITPYPSPPDIVPSPPSYEPSPPSYEP-SPP 662

Query: 477 AYYVDRPQGRPYFKPTPFP 533
            Y  + P   PY  P  FP
Sbjct: 663 EYAPEPPVYAPY-PPGIFP 680


>04_03_1022 - 21778315-21779007
          Length = 230

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
 Frame = +3

Query: 204 PGHVLISNPDPG--FXRPVIGQPGYVPISTGPAYVNRPYNRPQRPIVINDPDPFFAQPTV 377
           P H+L  +P P   +  P    P + P    PA    PY  P  P   + P P  A  T 
Sbjct: 49  PPHLLPPSPAPQQWYDHPPNYHPPHTP---APAPAPGPYIPPHHPHHHHPPTPAPAPSTT 105

Query: 378 GNGYEPIDNRPYIVNPPKDYNP 443
             G+  +   PY   PP    P
Sbjct: 106 PGGHGGVP--PYYPPPPVTPTP 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,588,575
Number of Sequences: 37544
Number of extensions: 385922
Number of successful extensions: 861
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)