Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_H16
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.16 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   4.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +3

Query: 246 RPVIGQPGYVPISTGPAYVNRPYNRPQRPIVINDPDPFFAQPTVGNGYEPIDNRP 410
           +P+I Q    P S  P     P+  PQ P   + P+P    P  G    P    P
Sbjct: 6   QPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 476  CILRGPSPRPTLLQA 520
            C+LR  +P P +L+A
Sbjct: 1106 CVLRASTPAPVVLEA 1120


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 350 RSILCPAYCRKRLRT 394
           +SI+C  +C++R  T
Sbjct: 74  KSIICKCFCKRRTNT 88


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 350 RSILCPAYCRKRLRT 394
           +SI+C  +C++R  T
Sbjct: 522 KSIICKCFCKRRTNT 536


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 302  KPSLQQTPEANCDQ*PRSILCPAYCRKRLRTY*QPPVHR*SSQRLQ 439
            +P L QT E      P  + C A   + L+   QPP +  S+  +Q
Sbjct: 1100 EPLLTQTMEDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQ 1145


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 302  KPSLQQTPEANCDQ*PRSILCPAYCRKRLRTY*QPPVHR*SSQRLQ 439
            +P L QT E      P  + C A   + L+   QPP +  S+  +Q
Sbjct: 1096 EPLLTQTMEDVPSIPPEDVRCAALTSQSLQVSWQPPPNTHSNGIIQ 1141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,995
Number of Sequences: 438
Number of extensions: 4705
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)