Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_H13
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 32 0.083
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.083
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 28 1.0
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 28 1.3
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 1.8
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 2.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.3
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 3.1
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 5.4
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 26 5.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.2
SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|... 25 9.5
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 9.5
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 31.9 bits (69), Expect = 0.083
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = +1
Query: 187 GSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNS 366
GS P+ +S +A++ + ++ + T RKP PT +PK V P+ + S T+P++
Sbjct: 395 GSDHPSSQDNSSKASLVENSQTQSSTPRKPL-PTT-TSPK---VNPEPHSESISDTRPST 449
Query: 367 GRS*RPNTIP 396
R P+T+P
Sbjct: 450 PRKVPPSTVP 459
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.083
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Frame = +1
Query: 115 PRSPXNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRK-PSRPTA 291
P + +ST TN++ TS+ T +S PT +SS + + +S P PT+
Sbjct: 208 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTS 267
Query: 292 LNA--PKRKRVEPKR*LVTSSTTKPNSGRS*RP--NTIPPTSS 408
++ + T+ST+ P +G S P T+PPTS+
Sbjct: 268 TSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTST 310
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 118 RSPXNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLT-SRKPSRPTAL 294
R P +S T TL + L + + +S P+K R+LN+T S P ++
Sbjct: 569 RKPLSSQNTFDTLPTISQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASV 628
Query: 295 NAP 303
AP
Sbjct: 629 LAP 631
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 190 SSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSS-TTKPNS 366
S P+ +A S ++ + + KP++P L AP+ K + P R +SS PN
Sbjct: 978 SPAPSSLARSSVSSQRSSTSIIPIKPNKPTKPDHLVAPRVKPLLPPRSGSSSSGVPAPNL 1037
Query: 367 GRS*RPNTIPPTSSQRNMK 423
P T PP S + +
Sbjct: 1038 TPVNVPPTPPPRKSSASQR 1056
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 1.8
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Frame = +1
Query: 115 PRSPXNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLT-------SRK 273
P +P ++T T TT S G+S ASS++ P +R LT S
Sbjct: 249 PENPDSNTSTPTTRS---EPLAGEGASIDAENASSRQETTPSDSRPSTLTSLFNAFFSSM 305
Query: 274 PSRPTALNAPKRKRVEPKR*LVTSSTT 354
P RP++ N P + +T+ST+
Sbjct: 306 PDRPSS-NEPMTSNLTSNSGSMTNSTS 331
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 2.3
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 235 PQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGR-S*RPNTIPPTSSQ 411
P+K N S K TALN + + +SS + GR + + P SSQ
Sbjct: 9 PKKVGNTEQVSEKQHTDTALNISQDNKTS------SSSAKRGAKGRRGTKGKSGPANSSQ 62
Query: 412 RNMKLNSNALQLKF 453
+ SNAL+L+F
Sbjct: 63 TSNIEGSNALELEF 76
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 106 GCGPRSPXNSTQTNTTLSIWTSSYLTVGSSFPTYIASS 219
G G S N+TQ T SIW SS T+ S+ I +
Sbjct: 910 GSGYPSYSNTTQGMNTTSIWNSSNSTIVSNVTATITGN 947
Score = 25.0 bits (52), Expect = 9.5
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = +1
Query: 133 STQTNTTLSIW-TSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKR 309
S+ TN+T S TSS LT S+ + +ASS + + ++ +S S T+ +
Sbjct: 93 SSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASS 152
Query: 310 KRVEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRNMKLNSNA 438
L +SST S PTSS + L+S A
Sbjct: 153 STTSSS--LASSSTNSTTSA--------TPTSSATSSSLSSTA 185
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 268 RKPSRPTALNAPKRKRVEPKR 330
+ P++P L AP+RK PK+
Sbjct: 277 QSPTKPVLLTAPRRKNKSPKK 297
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 229 NVPQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS 375
+VPQK LN +S S P K+ RV P+R S P+S R+
Sbjct: 275 SVPQK--RLNASSNVSSNPA-----KKTRVSPRRSTAASKKKSPSSKRA 316
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 289 ALNAPKRKRVEPKR*LVTSSTTKPNSGRS 375
ALN KR R K ++ SSTT+P +G++
Sbjct: 464 ALNFVKRVREITKMTMLASSTTRPATGQT 492
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 7.2
Identities = 23/96 (23%), Positives = 38/96 (39%)
Frame = +1
Query: 145 NTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVEP 324
+T+ S SY+T + T ++ NL ++ P + +++ P
Sbjct: 262 STSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNTSPQISSTISSSSFIVESP 321
Query: 325 KR*LVTSSTTKPNSGRS*RPNTIPPTSSQRNMKLNS 432
L TSSTT + + NTI SS+ NS
Sbjct: 322 SVALSTSSTTTITNASTPAANTIISRSSKPTDTTNS 357
>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
3|||Manual
Length = 109
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 237 AEGKELKSHIKEALETNCAKCTKAQKGGTEKM 332
A G E K +T CA+C +KGG K+
Sbjct: 4 APGDEKKG--ASLFKTRCAQCHTVEKGGANKV 33
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 225 GQCTAEGKELKSHIKE 272
G+C EGKEL++ +KE
Sbjct: 315 GECYFEGKELEADVKE 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,440
Number of Sequences: 5004
Number of extensions: 57332
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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