Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_H13
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50027-2|CAA90335.1| 188|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p... 29 3.8
U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical pr... 28 5.0
U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z77136-9|CAI91180.1| 474|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z77136-7|CAD54177.1| 472|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z77136-6|CAB00883.1| 488|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z50027-2|CAA90335.1| 188|Caenorhabditis elegans Hypothetical
protein C39B10.3 protein.
Length = 188
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +3
Query: 324 EKMIGHLINHEAEFWEELKAKYDPTNEFTKKYETELKRVTA 446
E+M+ L++ ++ EEL+ K D + TK+YE EL++V A
Sbjct: 81 EEMLTFLVDASKKYDEELEEKRDENKKATKEYE-ELEKVAA 120
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 199 PTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS 375
P + + + VP+ + T+R P+R T P+ K V + TSS P+ +S
Sbjct: 626 PASVIAPSSSVVPKSQPRPSPTTRPPTRATIRPTPQNKAVTSRPAPATSSVVTPSPSQS 684
>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +1
Query: 118 RSPXNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALN 297
RSP +T ++T+++ +S L P IA R VPQ+ N N SR S+ +
Sbjct: 717 RSPIKTTASSTSVNSASSPLLLQPHPHPPVIAEYPRGFVPQQI-NPNKMSRWQSKTVTES 775
Query: 298 APKRK 312
+R+
Sbjct: 776 EAERR 780
>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +1
Query: 118 RSPXNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALN 297
RSP +T ++T+++ +S L P IA R VPQ+ N N SR S+ +
Sbjct: 717 RSPIKTTASSTSVNSASSPLLLQPHPHPPVIAEYPRGFVPQQI-NPNKMSRWQSKTVTES 775
Query: 298 APKRK 312
+R+
Sbjct: 776 EAERR 780
>U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical
protein T13C2.3a protein.
Length = 431
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = +1
Query: 142 TNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVE 321
T+TT S T++ T T S+ P+ ++ L + RP ++ KR++
Sbjct: 320 TSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLPPQI-YRPRPIDQMKRRKQT 378
Query: 322 PKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRN 417
PK+ V TK SG RP + ++S N
Sbjct: 379 PKKCRVAYVRTK--SGSRTRPVLVCDSASAAN 408
>U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical
protein T13C2.3b protein.
Length = 506
Score = 28.3 bits (60), Expect = 5.0
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = +1
Query: 142 TNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVE 321
T+TT S T++ T T S+ P+ ++ L + RP ++ KR++
Sbjct: 395 TSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLPPQI-YRPRPIDQMKRRKQT 453
Query: 322 PKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRN 417
PK+ V TK SG RP + ++S N
Sbjct: 454 PKKCRVAYVRTK--SGSRTRPVLVCDSASAAN 483
>Z77136-9|CAI91180.1| 474|Caenorhabditis elegans Hypothetical
protein ZC376.7c protein.
Length = 474
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 334 LVTSSTTKPNSGRS*RPNTIPPTSS 408
L+TSST+ P+SG S IPP SS
Sbjct: 251 LMTSSTSSPDSGISLYDPMIPPPSS 275
>Z77136-7|CAD54177.1| 472|Caenorhabditis elegans Hypothetical
protein ZC376.7b protein.
Length = 472
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 334 LVTSSTTKPNSGRS*RPNTIPPTSS 408
L+TSST+ P+SG S IPP SS
Sbjct: 249 LMTSSTSSPDSGISLYDPMIPPPSS 273
>Z77136-6|CAB00883.1| 488|Caenorhabditis elegans Hypothetical
protein ZC376.7a protein.
Length = 488
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 334 LVTSSTTKPNSGRS*RPNTIPPTSS 408
L+TSST+ P+SG S IPP SS
Sbjct: 265 LMTSSTSSPDSGISLYDPMIPPPSS 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,154,202
Number of Sequences: 27780
Number of extensions: 328808
Number of successful extensions: 1030
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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