Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_H12
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    32   0.093
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    30   0.38 
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    26   4.6  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 31.9 bits (69), Expect = 0.093
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
 Frame = +2

Query: 230 SFSENEEYIKSCPSVDQENMTECS------SLLYPCITCNRSIDCRYG-GFYNYTCTVKP 388
           SF ++ ++++ CP+ D E   EC       S + P +TCN      +G G  N+  T+ P
Sbjct: 206 SFVDDNDHLRWCPAPDCEFAIECHVTQASLSSVVPTVTCNCGKQFCFGCGHDNHQPTICP 265

Query: 389 KVVCQGLKTFNKSSMCRFCYQTDKWEHRC----EQKANCNSL 502
            V     K  + S    + +   K   +C    E+   CN +
Sbjct: 266 LVKIWLQKCQDDSETANWIHANTKECPKCSTTIEKNGGCNHM 307


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 265 TTFYVFFILTKTYTFVI*ITFYFILFTVKIHVIISHIGDMYC 140
           T FY  F+L      +  I++YF+L  V +++    +G +YC
Sbjct: 154 TGFYSLFLLLSMSDSMSSISYYFLLSLVLLYIASISLGRIYC 195


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 58  DFQHASXSAFTYXHSSLFYFDFISNNEHNTCHRYG 162
           DFQ  S   +    S L +F  I  N H+  H YG
Sbjct: 104 DFQATSPLDYRVLDSMLPFFTGIYGNPHSRTHAYG 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,778
Number of Sequences: 5004
Number of extensions: 57392
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)