Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_H12
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical ... 95 3e-20
Z66522-1|CAA91406.3| 425|Caenorhabditis elegans Hypothetical pr... 33 0.15
L14745-13|AAR25658.1| 210|Caenorhabditis elegans Hypothetical p... 30 1.4
Z81463-7|CAE17701.1| 172|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical pr... 29 3.3
U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical p... 29 4.3
AF125455-2|AAP13747.2| 431|Caenorhabditis elegans Hypothetical ... 29 4.3
Z81563-2|CAB04564.1| 181|Caenorhabditis elegans Hypothetical pr... 28 5.7
U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger pr... 28 5.7
Z81585-4|CAB04687.1| 345|Caenorhabditis elegans Hypothetical pr... 28 7.6
U53154-4|AAC25851.1| 346|Caenorhabditis elegans Hypothetical pr... 28 7.6
U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical pr... 28 7.6
>AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical
protein C41D11.9 protein.
Length = 195
Score = 95.5 bits (227), Expect = 3e-20
Identities = 46/130 (35%), Positives = 65/130 (50%)
Frame = +2
Query: 320 ITCNRSIDCRYGGFYNYTCTVKPKVVCQGLKTFNKSSMCRFCYQTDKWEHRCEQKANCNS 499
+TC DCR G CT + K + N ++CRFC+Q ++ CE NC++
Sbjct: 38 LTCTFPGDCRIGDTVKVNCTSR-KGCPNPVSRNNVEAVCRFCWQLLPGDYDCEPATNCST 96
Query: 500 LASPLKYYLTNCTVSDDVICLGKRRFLKKVRCSWTSGTRWXXXXXXXXXXXXXXXDRFYL 679
S K +T C+ VIC+G+R F K++ C+W+SG W DRFYL
Sbjct: 97 --SSTKLLVTKCSAHSSVICMGQRNFYKRIPCNWSSGYSWTKTMILSVVLGGFGADRFYL 154
Query: 680 GHWQEGIGKL 709
G W+ IGKL
Sbjct: 155 GLWKSAIGKL 164
>Z66522-1|CAA91406.3| 425|Caenorhabditis elegans Hypothetical
protein F14E5.3 protein.
Length = 425
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 221 KGVSFSENEEYIKSCPSVDQENMTECSSLLYPCITCNRSI 340
+G +F+ N IK CP ++ N E ++LY C+ N SI
Sbjct: 195 RGCNFTRNSR-IKQCPKTEKVNRDEMYAVLYECMGGNHSI 233
>L14745-13|AAR25658.1| 210|Caenorhabditis elegans Hypothetical
protein C02F5.13 protein.
Length = 210
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 359 FYNYTCTVKPKVVCQGLKTFNKSSMC 436
F N C V P + C G +TF KS+ C
Sbjct: 113 FTNVKCRVLPCIECHGPRTFTKSTPC 138
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/69 (26%), Positives = 26/69 (37%)
Frame = +2
Query: 503 ASPLKYYLTNCTVSDDVICLGKRRFLKKVRCSWTSGTRWXXXXXXXXXXXXXXXDRFYLG 682
A +++ C V + C G R F K C +G + DRF LG
Sbjct: 108 AEDVEFTNVKCRVLPCIECHGPRTFTKSTPCIIYNGHYFLTTLLYSIFLGVVAVDRFCLG 167
Query: 683 HWQEGIGKL 709
+ +GKL
Sbjct: 168 YSAMAVGKL 176
>Z81463-7|CAE17701.1| 172|Caenorhabditis elegans Hypothetical
protein C06B8.11 protein.
Length = 172
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Frame = +2
Query: 176 DFHSKENK--IKGDSNDKGV-SFSENEEYIKSCPSVDQENMTECSSLLYPCITCNRSIDC 346
DF N + G +GV ++ + +++ P+ D C S Y C++ I+
Sbjct: 60 DFRCAANSKSLGGHCQIEGVQTYGDKYRFLRGIPAFDCGKNGVCLSSPYYNFCCDKRIED 119
Query: 347 RYGGFYNYTCTVKPKVVCQGLKTF---NKSSMCRFC 445
+Y ++ C KVV G + KS FC
Sbjct: 120 KYNADFDPKCARGTKVVKDGESGYILRGKSCKSNFC 155
>Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical
protein F48F7.5 protein.
Length = 293
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +2
Query: 152 TDMANNNMDFHSKENKIKGDSNDK-GVSFSENEE----YIKSCPSVDQENMTE 295
TD+ +++D + +E ++ +SND F E +E Y++ P+ D+E + E
Sbjct: 231 TDLEGSDVDENREEKELIDESNDSDDTEFEEEDEYETDYVEDEPTFDEETIPE 283
>U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical
protein C05D11.1 protein.
Length = 995
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/90 (25%), Positives = 42/90 (46%)
Frame = +2
Query: 47 SNALISSMHRTLPLRXSIRACFILILLVIMNTIHVTDMANNNMDFHSKENKIKGDSNDKG 226
+NA + H L F+ +L V +N + +T M + F ++ + I G+ ND G
Sbjct: 91 TNAWTDTDHTAYTLSTVGSDGFLKVLPVYINHL-LTPMLTASQ-FATEVHHITGEGNDAG 148
Query: 227 VSFSENEEYIKSCPSVDQENMTECSSLLYP 316
V +SE +++ S+ E ++YP
Sbjct: 149 VVYSEMQDHESEMESIMDRKTKE---VIYP 175
>AF125455-2|AAP13747.2| 431|Caenorhabditis elegans Hypothetical
protein Y48A5A.1 protein.
Length = 431
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 440 FCY--QTDKWEHRCEQKANCNSLASPLKYYLTNCTVSDDVICLGKR 571
+CY + + WE CE NC L+ L ++ +V + ++ +R
Sbjct: 267 YCYDQRVNDWESACESGWNCAKLSPSLSFFAKFSSVKECLLACTRR 312
>Z81563-2|CAB04564.1| 181|Caenorhabditis elegans Hypothetical
protein K04H8.2 protein.
Length = 181
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 284 NMTECSSLLYPCIT-CNRSIDCRYGGFYNYTC 376
N TE + C+T C+ +DC GF N TC
Sbjct: 60 NFTEKTVNWSSCVTNCHNKLDCIVAGFENGTC 91
>U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger
protein protein 1 protein.
Length = 381
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 179 FHSKENKIKGDSNDKGVSFSENEEYIKSCPSVDQENMTECSSLLYPCI 322
F + + I S G SF N E CP D +N++ECS YP +
Sbjct: 262 FGNDNDSISQVSTTSG-SFG-NHENDHFCPFSDDDNISECSDDYYPTL 307
>Z81585-4|CAB04687.1| 345|Caenorhabditis elegans Hypothetical
protein T05E12.4 protein.
Length = 345
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 56 LISSMHRTLPLRXSIRACFILILLVIMNTIHVTDMANNNMDFHSKENKIKGD 211
L++S+H + +R +R C I I ++ I + D+ N ++ F + K D
Sbjct: 21 LVNSLHLLVLIRKPLRCCGIFIFML---AICLADITNYSLSFTGAARRYKHD 69
>U53154-4|AAC25851.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.9 protein.
Length = 346
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 359 FYNYTCTVKPKVVCQGLKTFNKSSMCRFC 445
F Y + KP++ C + F+ S CR+C
Sbjct: 27 FRRYVNSKKPQIECTCSQKFDSSGPCRYC 55
>U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical
protein SSSD1.1 protein.
Length = 636
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 227 VSFSENEEYIKSCPSVDQENMTECSSLLYPCITCN 331
+++S NE+ I + P + N+ E LY C+ N
Sbjct: 73 ITWSRNEQIISTSPVLTLSNLEEGDKGLYTCLAVN 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,453,396
Number of Sequences: 27780
Number of extensions: 322171
Number of successful extensions: 889
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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