Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_H05
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      31   1.2  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_16184| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_50240| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_41445| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_23337| Best HMM Match : Ank (HMM E-Value=5.1e-07)                   28   8.3  

>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 300  TPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQPEKF 467
            T +   T+ S P     + A  T  +I+ ST+TP A   P T  A+S  +  P  F
Sbjct: 2259 TTAEALTSTSTPFA---FGAATTTAAISTSTSTPFAFGAPATAAAVSTASSAPSAF 2311



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +3

Query: 294  TLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQPEKF 467
            T T S  +   S+      + A  T      ST+TP A    TTT A+S  T  P  F
Sbjct: 2235 TATGSSTSVPQSIATAPFVFGAATTTAEALTSTSTPFAFGAATTTAAISTSTSTPFAF 2292


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 154  WQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLP 297
            W+ RD+  +S I AVL    KR   ++ R K   N  ++FS      P
Sbjct: 4708 WKSRDSDSDSSIDAVLDEMEKRRAGYEDRRKSFENLKRKFSEPSCTSP 4755


>SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 1    RPADECAPVPVRHSTSARPRHHTTLFNYDRYLTEYEHDID 120
            +P +   PVPV+H   A+P +   L N   Y   YE D D
Sbjct: 896  KPVEMPQPVPVKHDEQAQPVNERGLEN-KNYTLSYEDDSD 934


>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1455

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
 Frame = +1

Query: 4    PADECAPVPVRHSTSARPRHHTTLFNYD-----RYLTEYEHDIDRQNVQN 138
            P  +  PVP+ HS  A   HH  + NY      RY T   H    +N  N
Sbjct: 867  PQFQRPPVPMMHSDPAHLMHHGNMMNYQMNQRHRYSTPQPHPNQYRNFPN 916


>SB_16184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +1

Query: 22  PVPVRHSTSARPRHHTTLFNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAV 198
           P P+ H+ +    +    FN   YL +Y + +  +NV+   R D  ++ + ++S  L++
Sbjct: 80  PYPLGHAVTCLAINECLGFNVVDYLHDYHYGVQNENVRRP-RRDSNRQPSDQKSDALSI 137


>SB_50240| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 166 DAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLPLL 303
           D  E+ +    +R F++ +GR   +  V+ANT +     P  L +L
Sbjct: 147 DETEDRRRAETMREFTREYGRGVRQANVRANTKKLTGTLPYSLSML 192


>SB_27891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 297 LTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 437
           L P RF +   L  R  R+P  ++  S   ST   R  S P +  +L
Sbjct: 346 LNPKRFWSIFKLKSRDFRFPGIMSIGSAENSTQPARLASTPASIASL 392


>SB_41445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 487 LSWTTPLNFSGWPVIIERARVVVGI 413
           LSW   +   GWPVI ER  +V+GI
Sbjct: 163 LSWI--MENGGWPVITERYLIVLGI 185


>SB_23337| Best HMM Match : Ank (HMM E-Value=5.1e-07)
          Length = 213

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 244 KVQANTPQRFSRTPVDLPLLQVDLR 318
           KV AN P +F RTP+   +L+ D+R
Sbjct: 140 KVDANLPGQFGRTPLHNAVLKGDMR 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,680,132
Number of Sequences: 59808
Number of extensions: 443575
Number of successful extensions: 1371
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)