Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_H04
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 212 4e-56
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 37 0.004
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.41
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 27 3.8
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 26 5.1
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 6.7
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 8.9
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy... 25 8.9
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom... 25 8.9
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 8.9
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 25 8.9
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 212 bits (518), Expect = 4e-56
Identities = 98/213 (46%), Positives = 135/213 (63%), Gaps = 1/213 (0%)
Frame = +3
Query: 123 TLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGATTELR 302
+L ++++ +D+ KD + L AV+IPSVS DV R + M ++ + ++GA E R
Sbjct: 2 SLDKLYEVIDKKKDEFVTRLSRAVSIPSVSADVTLRPKVVEMADFVVSEFTKLGAKMEKR 61
Query: 303 DVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETEPFEL-VERN 479
D+G+ +DG+DV NDP K TV IY H DVQPA DGW T+PF L V+
Sbjct: 62 DIGYHQMDGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGWSTDPFTLTVDNK 121
Query: 480 EKLYGRGSTDDKGPVLGWLHTINAYKGTGAELPVNLKFIFECMEESGSEGLDSLLMDKLK 659
+++GRG+TDDKGP++GW+ I A+K G + PVNL FE MEE GSEGL+ L+ + +
Sbjct: 122 GRMFGRGATDDKGPLIGWISAIEAHKELGIDFPVNLLMCFEGMEEYGSEGLEDLI--RAE 179
Query: 660 PEGFFDSVDYVCISDNYWLGTTXPCITYGLRGI 758
E +F D VCISD YWLGT P +TYGLRG+
Sbjct: 180 AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGV 212
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 399 IYGHLDVQPALKS--DGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTI 545
+ GH DV P ++ D W PF N +Y RG+ DDK V+ L +
Sbjct: 194 LMGHQDVVPVNQASLDRWYFPPFSATYHNGHVYSRGAADDKNSVVAILEAL 244
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.9 bits (64), Expect = 0.41
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Frame = -3
Query: 535 SQPSTGPLSSVEPRPYNFSLRSTSSKGSVSHPSDFKAGCTSK*P*IQTVFFFGSLPNTPT 356
S ST SS+ + S+SS S S + +S + S ++PT
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPT 284
Query: 355 KTGGS*TSLPSIV*KPTSLNSVVAPTSFNLSCIQ*TI---RMQSARYFTSHETDGMATAS 185
T + +S S PTS +S ++ +S + S T+ M S+ F+S T +T S
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTIS 344
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 123 FFPLPF-LQKLVWNSLNNVDDKQEKMVQAVSLPAILLIIG 7
F PL F L +LV+N L ++DD+Q + + + ++IG
Sbjct: 59 FNPLAFPLGRLVYNFLTSLDDQQALLEEFEYFRRVFVLIG 98
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 426 QVVHPNDHRYKLYFFLDHYPIR 361
++V P D + YFFL HY I+
Sbjct: 295 EMVEPFDEWEEFYFFLQHYSIQ 316
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 516 GPVLGWL-HTINAYKGTGAELPVNLKFIFECMEES 617
GP L ++ TIN Y+GTG L +LK + + E+S
Sbjct: 401 GPYLVFMASTINGYEGTGRSL--SLKLLQQLREQS 433
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 135 FQAMFFPLPFLQKLVWN-SLNNVDDKQEKMVQAVSLPAILLIIG 7
F+AMFFP+ L++ W L D ++ + + + A+L +G
Sbjct: 455 FKAMFFPIAALRQKFWRVMLAQYGDIEDGHIGKLGMYAVLDTLG 498
>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 432 SKQVVHPNDHRYKLYFFLDHYPIRLLKLAAVERL-CHLLFESQH 304
SK+ VHPNDH D +P ++ +A+V ++ HLL +H
Sbjct: 141 SKKPVHPNDHVNMSQSSNDTFP-TVMHIASVLQIHTHLLPAMKH 183
>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 501 NLVHIIFHCAQLVQKVQSPIHQISKQVVHPNDHRYKL 391
NL F ++L+Q++QS + I + N+H Y++
Sbjct: 42 NLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRV 78
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 471 QLVQKVQSPIHQISKQVVHPNDHRYKLYFFLDHYPIRLLKLAA 343
++VQK S +H+++K++ H +L F Y + LL++ A
Sbjct: 538 EIVQKSLSVLHKVTKKIDKKAQHLQQLNAFQLLYSLVLLQVYA 580
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 378 PKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKL 488
P + I DV+P LKS + P E R EKL
Sbjct: 311 PLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,175
Number of Sequences: 5004
Number of extensions: 70878
Number of successful extensions: 208
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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