Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_H04
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)                   57   1e-08
SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)                       42   5e-04
SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)         36   0.036
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.58 
SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)                       29   4.1  
SB_42534| Best HMM Match : DUF699 (HMM E-Value=0)                      28   9.5  
SB_6120| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)
          Length = 233

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 23/26 (88%), Positives = 23/26 (88%)
 Frame = +3

Query: 681 VDYVCISDNYWLGTTXPCITYGLRGI 758
           VDYVCISDNYWLG   PCITYGLRGI
Sbjct: 137 VDYVCISDNYWLGKEKPCITYGLRGI 162



 Score = 32.3 bits (70), Expect = 0.44
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
 Frame = +3

Query: 135 IFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDK--------------L 272
           IF +V  +++ Y + L +AVAI SVS   + R +  +MV+ + +K              L
Sbjct: 36  IFVFV-YSQELYIKRLADAVAIKSVSAWPETRGEITKMVNHVAEKIRCKIYKVYRVLMEL 94

Query: 273 KEVGATTELRDVGFQTI-DGKDVQXXXXXXXXXXNDPKKNTVCIY 404
           K++G   EL DVG +T+ DG  +           ++P K T   Y
Sbjct: 95  KKLGTEVELVDVGTETLPDGSTLPLPPVLLGILGSNPAKKTPVDY 139


>SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)
          Length = 75

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 384 KNTVCIYGHLDVQPALKSDGWET--EPFELVERNEKLYGRGSTDDKGPVLGWLHTINAYK 557
           ++TV +YGHLD QP  +  GW     P+     + KLYGRG  DD   V   L  I A +
Sbjct: 15  RDTVLLYGHLDKQP--EFSGWRAGLGPWTPKYEDGKLYGRGGADDGYAVYASLTAIMALE 72

Query: 558 G 560
           G
Sbjct: 73  G 73


>SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)
          Length = 702

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
 Frame = +3

Query: 399 IYGHLDVQPALKSDGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTINAYKGTGAELP 578
           I  HLDV PA  S  W+  PF+   ++  ++GRG+ D K  V+  L  + A    G +  
Sbjct: 464 IASHLDVVPAPGS--WDVPPFDGRVKDGYIWGRGTLDVKNGVMASLEAVQALLKLGQKPK 521

Query: 579 VNLKFIFECMEE-SGSEGLDSLLM----DKLKPEGFFDSVDYVCISDNYWLGTTXPCITY 743
            +    +   EE  G++G  ++ M      +K E   D  + + I  N + G T P    
Sbjct: 522 RSFYLAYGHDEEVQGADGARNIGMLLKARNIKLEFIVD--EGMVIVKNVFPGLTTPYAII 579

Query: 744 GL 749
           G+
Sbjct: 580 GV 581


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 21   KLPATKQLVPFFPAYHQHYSV-SSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVA 197
            ++  TK  VP   A  + + V SSK VS + AT  TLPE+ + +D   D+  + +   + 
Sbjct: 1660 RVTKTKSSVPLLAALRRCFVVASSKDVSPRRATTVTLPEL-RAMDDLADAADRRVAHVLP 1718

Query: 198  IPSVSCD 218
            I S   D
Sbjct: 1719 IASSESD 1725


>SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)
          Length = 361

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 78  SVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 218
           S SSK VS++ AT  TLPE+ + +D   D+  + +  A+ I S   D
Sbjct: 18  SRSSKDVSSRRATTVTLPEL-RAMDDLADAADRRVAHALPIASSESD 63


>SB_42534| Best HMM Match : DUF699 (HMM E-Value=0)
          Length = 739

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 516 GPVLGWLH-TINAYKGTGAELPVNLKFIFECMEESGSEGLDS 638
           GP L ++  TIN Y+GTG  L  +LK + +  ++S  +G+ S
Sbjct: 128 GPYLVFMSSTINGYEGTGRSL--SLKLLQQLRQQSVPQGVTS 167


>SB_6120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 45  VPFFPAYHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 218
           +P  P+     S SSK VS + AT  TLPE+ + +D   D+  + +   + I S   D
Sbjct: 8   IPCRPSDVASSSRSSKDVSPRRATTVTLPEL-RAMDDLADAADRRVAHVLPIASSESD 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,112,934
Number of Sequences: 59808
Number of extensions: 501911
Number of successful extensions: 1381
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)