Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G24
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)             27   7.9  

>SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 246  YLFIKYTYVLTTNFAR*FKLIFININLNKYELIFFFYNP 130
            YLF++   +L  NF     L F + N ++  L FF Y P
Sbjct: 914  YLFLRPADILLLNFISESALTFSSHNSSRIALFFFAYVP 952


>SB_29424| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
          Length = 712

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
 Frame = -2

Query: 258 TENEYLFIKYTYVLTTNFAR*FKLI-------FININLNKYELIFFFYNP*STVDPSVAG 100
           T+ E +F+KY  VLT   +  F L+       FI   L K  L  F ++  S+++  +  
Sbjct: 246 TKREIIFVKYEMVLTVAMSYGFPLVVMVIMYAFIIRELWK-RLDIFAHDQNSSLERRIQR 304

Query: 99  AFDSSLSNLSSGTTVFFFCWF 37
                +    +  TVF  CWF
Sbjct: 305 QNRPLVKMFVTLVTVFAICWF 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,145,258
Number of Sequences: 59808
Number of extensions: 83259
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)