Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G23
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    28   1.6  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.8  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   4.9  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   6.4  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    26   6.4  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   8.5  

>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 458 ARRPTFPERLRSREPIAETIEDTSKGTIKLLSIL 357
           AR+P   ++ +   P+AE +E T+ G  K+L  L
Sbjct: 56  ARKPKLDKKAKIASPVAEYVEKTTPGEKKVLQDL 89


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 264  RNLAGMWPPCIRTSVVQTRRHVLPISRGAFPQDAQEFDSAFAGVLNRFSYRLSGSKPL 437
            RNL+G   P  R+   + +  +L  S     +  +E +S    ++ RF+   +GSKP+
Sbjct: 873  RNLSGSSSPSERSQSRELK--LLQASEKRLKEQVEERNSLIKNIVTRFTQLNTGSKPV 928


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 232 LTILTVVGVAAGTLLGCGLRASGHQWSKRDVM 327
           ++ L  +G+  G  +GCG+      W  R V+
Sbjct: 407 VSALPYIGILVGVFIGCGINCLFEPWYFRQVI 438


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 427 LSLSGKVGLRAIIYYMTTTVCAVMLGIAL-VTTIKPGSNS 543
           L  S   G+RA +++++T +C   LG+ +   T+  G+++
Sbjct: 330 LDHSNHHGVRAGVFFISTGLCLAQLGVNIAANTVSAGNDT 369


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 223 ENLLTILTVVGVAAGTLLGCGLRAS 297
           E+ +T + VVG   G L+ C LRA+
Sbjct: 342 ESSVTRIAVVGAGRGPLVDCALRAA 366


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 352 FLRMLKSLIVPLLVSSIVSAIGSLDL 429
           FL++L SL   L VSS  S + SL+L
Sbjct: 159 FLKLLMSLSAKLAVSSNSSTVSSLEL 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,132
Number of Sequences: 5004
Number of extensions: 66508
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)