Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_G23
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027... 33 0.31
03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337 31 0.95
02_01_0410 + 2996779-2997888 31 0.95
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 29 5.1
03_01_0065 + 529200-529438,529770-529929,530217-530299,530398-53... 29 5.1
08_02_1469 + 27345430-27345534,27345690-27345763,27345852-273459... 28 8.9
08_02_0922 + 22646822-22647742 28 8.9
08_01_0793 - 7685702-7686955 28 8.9
04_03_0187 + 12436934-12437108,12438020-12439044 28 8.9
>05_07_0143 +
28000038-28000211,28002217-28002230,28002713-28002788,
28003304-28003865,28004476-28004761,28004848-28005118,
28005478-28005633,28005871-28006368,28006809-28007093
Length = 773
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 388 LVSSIVSAIGSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTTIKPG--SNSKGNEEL 561
L+ S ++ + LD SLS + +++ Y + I++ T+KPG SN++ + L
Sbjct: 470 LLGSNIAPLRDLDFSLSPLLAAQSMTKYNSAAPTTTGPAISMQETLKPGVFSNAQSTQNL 529
Query: 562 NTTKIVT 582
+T I T
Sbjct: 530 PSTSIAT 536
>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
Length = 386
Score = 31.1 bits (67), Expect = 0.95
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 229 LLTILTVVGVAAGTLLGCGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVPLLVSSIVS 408
LL +V GVAAG L L + ++W+ VM F +PG L + +V +L+ +
Sbjct: 50 LLQQASVYGVAAGYCLSASLLSIINKWA---VMKFPYPGALTALQYFTSVVGVLLCGQLK 106
Query: 409 AI--GSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTT 522
I L+L K A+++Y++ + +L A V T
Sbjct: 107 LIEHDGLNLRTMWKFLPAAVMFYISIFTNSELLLHANVDT 146
>02_01_0410 + 2996779-2997888
Length = 369
Score = 31.1 bits (67), Expect = 0.95
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 229 LLTILTVVGVAAGTLLGCGLRASGHQWSKRDVMYFQFPGELFLRMLKSLIVPLLVSSIVS 408
LL +V GVAAG L L + ++W+ VM F +PG L + +V +L+ +
Sbjct: 33 LLQQTSVYGVAAGYCLSASLLSIINKWA---VMKFPYPGALTALQYFTSVVGVLLCGQLK 89
Query: 409 AI--GSLDLSLSGKVGLRAIIYYMTTTVCAVMLGIALVTT 522
I L+L K A+++Y++ + +L A V T
Sbjct: 90 LIEHDGLNLRTMWKFLPAAVMFYISIFTNSELLLHANVDT 129
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 298 GHQWSKRDVMYFQFPGELFLRMLKSLIVPLLVSSIVSAIGSLDLSLSGKVGL 453
GH R +F L S +PLLV + + IG + S SG++G+
Sbjct: 272 GHMDGSRSHPHFPVTARLTSTSSDSDSLPLLVDGVRNGIGGIARSFSGELGI 323
>03_01_0065 +
529200-529438,529770-529929,530217-530299,530398-530488,
530585-530680,531107-531220,531325-531408,531493-531648,
531755-531829,532172-532278,532361-532544,532970-533158,
533372-533452,533794-533925,534302-534355,534484-534809,
534925-535030,535491-535640,535763-535909
Length = 857
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 232 LTILTVVGVAAGTLLGCGLRASGHQWSKRDVMY--FQFPGELFLRMLKSLIVPLLVSSIV 405
L + + + V + T G AS + R V+ FQFP EL L+ + + V SIV
Sbjct: 624 LDLASSLEVGSATAQASG-DASADDCNLRSVLTIAFQFPYELHLQDSVAAMARQYVRSIV 682
Query: 406 SAIGSLDLSLS-GKVGLRA 459
SA+ + +++S + GL A
Sbjct: 683 SAVQRVSMAISPSQTGLNA 701
>08_02_1469 +
27345430-27345534,27345690-27345763,27345852-27345996,
27346359-27346460
Length = 141
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 51 VSRSKYKIESNDNSDAVLNALNRVVCDKVVLFLILKRKKIAE 176
+S + KI+ N D NA + +VC V L LK++K AE
Sbjct: 59 ISMIRNKIDQYTNDDDAGNARSYLVCMFVCSVLGLKKRKCAE 100
>08_02_0922 + 22646822-22647742
Length = 306
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 636 GEHTSSHDRFVSNEANLRPKRPENDKRATGDLQ 734
G +TSS ++ E + + KRPE K+A L+
Sbjct: 204 GAYTSSSNQDTEEETSRKEKRPEGQKKAKAKLK 236
>08_01_0793 - 7685702-7686955
Length = 417
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 636 GEHTSSHDRFVSNEANLRPKRPENDKRATGDLQ 734
G +TSS ++ E + + KRPE K+A L+
Sbjct: 293 GAYTSSSNQETEEETSRKEKRPEGQKKAKAKLK 325
>04_03_0187 + 12436934-12437108,12438020-12439044
Length = 399
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 636 GEHTSSHDRFVSNEANLRPKRPENDKRATGDLQ 734
G +TSS ++ E + + KRPE K+A L+
Sbjct: 275 GAYTSSSNQETEEETSRKEKRPEGQKKAKAKLK 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,257,214
Number of Sequences: 37544
Number of extensions: 475667
Number of successful extensions: 1282
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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