Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G16
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    30   0.35 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.4  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   3.3  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    27   4.4  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    26   5.8  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   5.8  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   5.8  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    26   5.8  

>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 28/102 (27%), Positives = 43/102 (42%)
 Frame = +3

Query: 138 LMAMKVLTRLQEIPEFNRENIHIRDETELVAKLNRIIKGGHNKLQIVTDFDHTLTRHTLD 317
           LM+     +   +PEF R+   + DE     K+  ++ G H  LQ +   D TL+   +D
Sbjct: 62  LMSFLNFDKEYSVPEFERDASRVIDEIHSQGKIPIVVGGTHYYLQSLLFEDTTLS--AID 119

Query: 318 NGKSVLTSFGMFRECPSIPQHYKDEDVRLASIYKPIEADPVM 443
                LT+     + P    H  D+D      Y   + DPVM
Sbjct: 120 K----LTNDSSPSKPPHPDSHILDDDPSAMLSYLK-KIDPVM 156


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = -1

Query: 592  IINSLTPFLKLSIILLATCV--NSLLGNCTPLSNA*AAIYQSTMCLVFSSTVITGS 431
            I+NS TP    S++  +T +  +S+L + TP++++ + +  ST   + SSTV+  S
Sbjct: 3101 IVNSSTPITSSSVLNSSTAITSSSILNSSTPITSS-SILNSSTP--ITSSTVVNSS 3153



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -1

Query: 622  STGTSWV*LQIINSLTPFLKLSIILLATCV--NSLLGNCTPLSNA*AAIYQSTMCLVFSS 449
            +T TS     ++NS TP    +++  +T +  +S+L + TP++++   +  ST   + SS
Sbjct: 2647 NTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSS-TVVNTSTP--ITSS 2703

Query: 448  TVITGS 431
            TV+  S
Sbjct: 2704 TVVNSS 2709



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -1

Query: 622  STGTSWV*LQIINSLTPFLKLSIILLATCV--NSLLGNCTPLSNA*AAIYQSTMCLVFSS 449
            +T TS     ++NS TP    +++  +T +  +S+L + TP++++   +  ST   + SS
Sbjct: 2875 NTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSS-TVVNTSTP--ITSS 2931

Query: 448  TVITGS 431
            TV+  S
Sbjct: 2932 TVVNSS 2937



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -1

Query: 622  STGTSWV*LQIINSLTPFLKLSIILLATCV--NSLLGNCTPLSNA*AAIYQSTMCLVFSS 449
            +T TS     ++NS TP    +++  +T +  +S+L + TP++++   +  ST   + SS
Sbjct: 2971 NTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSS-TVVNTSTP--ITSS 3027

Query: 448  TVITGS 431
            TV+  S
Sbjct: 3028 TVVNSS 3033



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -1

Query: 622  STGTSWV*LQIINSLTPFLKLSIILLATCV--NSLLGNCTPLSNA*AAIYQSTMCLVFSS 449
            +T TS     ++NS TP    +++  +T +  +S+L + TP++++   +  ST   + SS
Sbjct: 1303 NTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSS-TVVNSSTP--ITSS 1359

Query: 448  TVITGS 431
            TV+  S
Sbjct: 1360 TVVNTS 1365



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = -1

Query: 622  STGTSWV*LQIINSLTPFLKLSIILLATCV--NSLLGNCTPLSNA*AAIYQSTMCLVFSS 449
            +T TS     ++NS TP    +++  +T +  +S+L + TP++++   +  ST   + SS
Sbjct: 2371 NTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSS-TVVNTSTS--ITSS 2427

Query: 448  TVITGS 431
            +V+  S
Sbjct: 2428 SVLNSS 2433


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 390 EDVRLASIYKPIEADPVMTVEEKTKHMVDWYIAAHALLKGVQFP 521
           E VRL  I  P       T +++ KH   W IA+  +L+  + P
Sbjct: 253 EPVRLPPIGHPARETMPFTDDDEGKHCFVWDIASGRILRSFKIP 296


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 678 FLLPHVKVVSNFLALDENDKIV 743
           F L H  VV  FL L+EN KIV
Sbjct: 249 FSLFHGNVVGKFLVLEENKKIV 270


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = +3

Query: 81  NLDGRQTFEYYIIILFLN*LMAMKVLTRLQEIPE--FNRENIHIRDETELVAKLNRIIKG 254
           NLD  +   Y  + L  N +  ++ +  L+ +    F +  I   +  E + +L  +  G
Sbjct: 99  NLDNVKNLTY--LDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELG 156

Query: 255 GHNKLQIVTDFDHTLTRHTLDNGKSVLTSFGMFRE 359
           G NK++++ + D  +    L  GK+ +T F  F +
Sbjct: 157 G-NKIRVIENLDTLVNLEKLWVGKNKITKFENFEK 190


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 363 PSIPQHYKDEDVRLASIYKPIEADPVMTVEEKTKHMVDWYIAAHA 497
           PS+P    +  V   + Y+  EADPV    +  KH+ D++  ++A
Sbjct: 190 PSLPLLDSNAVVECFNSYQS-EADPVSNASKALKHVNDYFNTSYA 233


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 620  HRNLMGLTPNYQFFNALPKTVYHFIS 543
            H +      NY+ +NAL +++Y FI+
Sbjct: 1297 HDSCQAYKVNYEIYNALIRSIYRFIN 1322


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 366 SIPQHYKDEDVRLASIYKPIEADPVM 443
           SIP+    EDV   S  KPIEA P M
Sbjct: 37  SIPEKKLKEDVDQVSTTKPIEAVPKM 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,205
Number of Sequences: 5004
Number of extensions: 71389
Number of successful extensions: 208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)