Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G15
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...   103   2e-23
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...   101   1e-22
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    27   2.8  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  103 bits (248), Expect = 2e-23
 Identities = 56/148 (37%), Positives = 67/148 (45%)
 Frame = +3

Query: 78  MATSKKXPRKLXGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 257
           M T     RKL GHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 258 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 437
           FH  KN  + P +NLD+LWTLV  +TR KY        PVIN++++           P  
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT 120

Query: 438 PVIVXXXXXXXXXXXXXXDVGGACVLSA 521
           PVI+                GG   L A
Sbjct: 121 PVIIQTRYVSRRAEEKIKQAGGVVELIA 148


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score =  101 bits (241), Expect = 1e-22
 Identities = 55/148 (37%), Positives = 67/148 (45%)
 Frame = +3

Query: 78  MATSKKXPRKLXGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 257
           M T     RKL GHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 258 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 437
           FH  KN  + P +NLD+LWTL+  + R KY        PVIN++++           P+ 
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET 120

Query: 438 PVIVXXXXXXXXXXXXXXDVGGACVLSA 521
           PVIV                GG   L A
Sbjct: 121 PVIVQTRYVSRRAEEKIKQAGGVVELIA 148


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 2   IGNTTAALVRFFQFLSFSKVDGTLNHGHL 88
           +GN+  A VRFF F S  K   +  HGHL
Sbjct: 74  VGNSLKAAVRFFAFDSIKK-SLSDEHGHL 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,840
Number of Sequences: 5004
Number of extensions: 39339
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)