Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G12
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0514 - 3718795-3718860,3719349-3719524,3719785-3719877,371...    34   0.061
09_04_0219 - 15774809-15775198                                         29   1.7  

>02_01_0514 -
           3718795-3718860,3719349-3719524,3719785-3719877,
           3719961-3720111
          Length = 161

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
 Frame = +2

Query: 44  FGGILLSGXQLTFPXGXRAVXVTE----PXRPLTEAAEXKFQVTGGFKXFTYWNWDKKPS 211
           F G  L G  ++ P G R   + +          E     F+    F+  TYWN D  PS
Sbjct: 64  FRGRKLQGATISLPDGYRGYVLEKRSGGKDMKKLEGEVSNFKSRAEFQNITYWNHDTTPS 123

Query: 212 KNDDLCKAMDWIEIAEAV 265
             D L +    + +A A+
Sbjct: 124 AEDPLPRCFHLLTVANAM 141


>09_04_0219 - 15774809-15775198
          Length = 129

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 141 AASVKGRXGSVTKTARXPXGNVSCXPDKRMPPKRCR 34
           AA  + R G+ T T R P GN S    +  PP   R
Sbjct: 79  AADEEARRGAGTTTTREPTGNASSSYQRASPPAEAR 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,999,225
Number of Sequences: 37544
Number of extensions: 163042
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)