Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G12
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   1.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   5.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   5.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   5.9  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 279 KKTYLTASAISIQSMALHKSSFFDGFLS-QFQYVK 178
           K  Y   +  S+ S+ L  S FFD F++ Q Q +K
Sbjct: 288 KPDYRELTEYSVTSVRLISSGFFDNFVTVQIQPLK 322


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 324 SLTVFFFKLTQILCITNLL 380
           SLTVFF  L +I+  T+L+
Sbjct: 281 SLTVFFLLLAEIIPPTSLV 299


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 283 D*KNISDRFRNLDPVHGF 230
           D + I  R RNL+  HGF
Sbjct: 216 DLRTIYSRVRNLNRTHGF 233


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 324 SLTVFFFKLTQILCITNL 377
           SLTVFF  L +I+  T+L
Sbjct: 277 SLTVFFLLLAEIIPPTSL 294


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 324 WNWNNPLGYRRIARIKKTYLTASAIS 247
           WN N PL  R I  + K   T   IS
Sbjct: 327 WNENRPLKRRNIEIVAKNNDTLQFIS 352


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 324 SLTVFFFKLTQILCITNL 377
           SLTVFF  L +I+  T+L
Sbjct: 290 SLTVFFLLLAEIIPPTSL 307


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 231 LHKSSFFDGFLSQFQYVKXLKPPV 160
           + K  +FDGF  +    + L+PP+
Sbjct: 620 IQKHKWFDGFNWEGLRARTLEPPI 643


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,792
Number of Sequences: 438
Number of extensions: 1675
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)