Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_G10
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 29 0.55
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 29 0.72
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 28 1.3
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.9
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 6.7
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 8.9
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 25 8.9
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 8.9
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 29.5 bits (63), Expect = 0.55
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +2
Query: 377 AAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQ 556
A +VVQE NDL ++L + LN AY+ +KK++ + +L N + +
Sbjct: 677 AVNKVVQEDILFAIDNVYNDLAESLHEQLN-----AYIQRKKINKKNQL------NGNDE 725
Query: 557 TQQWLTLVENFSSALKE---IGDVENW 628
TQ + + F KE + DV +W
Sbjct: 726 TQNLVLALNKFGCFAKEMVCLRDVNDW 752
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 29.1 bits (62), Expect = 0.72
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +2
Query: 404 KRKECITA-ANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLV 580
K++ I A AN + DH N A +NQ + KLL+ G+ +F + L
Sbjct: 831 KKQAIIDANANIYDKLTADHTNYETVSADINQNLKETLDKLLN-GSSDFKNNEIELLHDQ 889
Query: 581 ENFSSALKEIGDVENWARSIENDMKIITDTLXRAYEKAQEKPSSXQ*SN 727
++A E + + N K I DTL ++A EK S+ + SN
Sbjct: 890 IRITNAKLEKRE------KLINASKYIEDTLRSEIQEAAEKVSNLEFSN 932
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 463 KCRCCSSLFKSEKVRCGSKTFTPRC--NKFFQTNTAMVDSCGKFQQCSQRNWGCRKLGTK 636
+C C ++ K + K F P C N +T T ++S G+FQ ++N+ + GTK
Sbjct: 255 RCHGCYTVVKDME-----KKFCPSCGGNTLIKT-TCSINSKGEFQVHLKKNFEWKTRGTK 308
Query: 637 Y 639
Y
Sbjct: 309 Y 309
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Frame = +2
Query: 473 VAQAYLNQKKLDAE--AKLLH-QGAINFSKQTQQWLTLVENFSSAL---KEIGDVENWAR 634
+A +L+ K + E L + +G + TQ W L+ENF S L +E ++ W+
Sbjct: 468 IAIKFLDDAKCETEDSTNLTNREGEAEKTLNTQPWKNLIENFISELQAEEEENNITEWSD 527
Query: 635 --SIEND 649
S+ ND
Sbjct: 528 IISVRND 534
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +1
Query: 442 TSIGRSFKCRCCSSLFKSEKVRCGSKTFTPRCNKFFQTNTAMVDSC 579
T + + RC LFK++ + K F C + N ++D C
Sbjct: 1201 TPVQQQLLRRCLEILFKTKDLSTVKKEFQNVCYQIMSGNVPVMDFC 1246
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 464 NVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDVENWARSIE 643
N+ + + + DA++K L + + K Q + + N S +LKE+ +V+N +E
Sbjct: 168 NLSLKWIIYDPEDADADSKTLAKAWLQQIKMNQTSIDPMSNISKSLKEL-EVDNVESDLE 226
Query: 644 N 646
+
Sbjct: 227 D 227
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 82 AEXRSFID*L-ISVHKSAQMGENKTNPKDVTSQDPSKSRLKKSH 210
A+ R F D + I + KS+ +G N +P D+ SKS+ + H
Sbjct: 185 AKKRVFEDQIEIHLSKSSLLGFNAPSPDDIVLMAQSKSKSFQKH 228
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/80 (22%), Positives = 40/80 (50%)
Frame = +2
Query: 461 LNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDVENWARSI 640
L V + QKK AEA+ + + +++T WL + + +S+ K++ +N +++
Sbjct: 667 LKVNKPEMKEGQKK--AEARKKKESPLEATEETNPWLQVPDQRTSSAKKLD--KNSSKAD 722
Query: 641 ENDMKIITDTLXRAYEKAQE 700
+ + K+ D + E +E
Sbjct: 723 KKNHKLKMDKVASLQELVEE 742
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 479 QAYLNQKKLDAEAKLLHQGAINFSKQTQQWLTLVENFSSALKEIGDVEN 625
+ Y Q DA +H G FSK+ WL + + ++++ D +N
Sbjct: 444 ELYGKQFYYDAVGIAVHNGGFYFSKKKMGWLKPNQPYLLSIQDPVDFQN 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,254
Number of Sequences: 5004
Number of extensions: 49748
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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