Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G09
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    42   1e-04
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   0.67 
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   4.7  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   8.2  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   8.2  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +2

Query: 353 FGSLIIGYARNPSLKQQLFSYAILGFALSE 442
           F +LI G +RNPS++  LFS AILGFAL+E
Sbjct: 28  FSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -2

Query: 646 AHCRCNTHQSLHHYEGEVSKHSIPWLSTP 560
           A  R NT Q    Y G    HS PW S+P
Sbjct: 146 AAVRKNTEQEKMGYRGGYQMHSTPWASSP 174


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 67  LLSRAAPXQNKMLSAASPDRPCSQVCHLLQLC-TGAXTCSSTHPYTDGTCCP 219
           LL  +   + K  ++ASPDRP SQ      +  T + T  ST   T+ T  P
Sbjct: 469 LLLVSQEKERKGYTSASPDRPLSQTITESSVAKTKSTTPKSTDTPTEATTSP 520


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 174 HLQQYPPIHRWYLLSLHSSLQC 239
           HL  Y P   WYL SLH    C
Sbjct: 63  HLTIYEPQLTWYLSSLHRITGC 84


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 667 INCIPVDAHCRCNTHQSLHHYEGEVSKHSIPWLST 563
           I C+  +     N H + HH   + +  SIP  +T
Sbjct: 116 IRCVYSEGPSTANAHANAHHQPAQTTTTSIPTSAT 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,130
Number of Sequences: 5004
Number of extensions: 57704
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)