Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_G09
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0490 + 22672241-22674679 31 0.70
03_06_0422 + 33818887-33819996 31 0.92
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 30 2.1
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 29 2.8
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 29 2.8
12_01_0329 + 2545511-2546683,2546983-2546993,2547377-2547438,254... 29 3.7
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 6.5
02_04_0120 - 19932330-19932366,19932562-19932781,19932876-199329... 28 6.5
10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101... 28 8.6
04_04_0836 + 28546414-28547001 28 8.6
01_01_0202 + 1753394-1753667,1753934-1753977,1754105-1754152,175... 28 8.6
>01_05_0490 + 22672241-22674679
Length = 812
Score = 31.5 bits (68), Expect = 0.70
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 249 RPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPP 392
+P + + T+T P L R+W + E+VLEQ S + MP PP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMPPPPP 342
>03_06_0422 + 33818887-33819996
Length = 369
Score = 31.1 bits (67), Expect = 0.92
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -2
Query: 493 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 323
E ++ER + E+T SL + N E ++L+G D+ +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 101 CCLPPVLIAPAARSAIFCNSALVRPLAAVP 190
CC+PPV ++PAA +A A +A P
Sbjct: 5 CCVPPVPVSPAASAAAAATPAASSAVAGAP 34
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = -2
Query: 541 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDE 362
L C + + + + ++ +T + Q T NG E L GG ++ +
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390
Query: 361 GAEDCSNTSSG--TSYSHCRCTSTNEFGSRVN 272
GAE S+ + T+ + T T+ G++ N
Sbjct: 391 GAESVSSNARAQPTTTNGGEETKTSNAGAQKN 422
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 121 DRPCSQVCHLLQLCTGAXTCSSTHPYTDGTCCPYTALC 234
++P +QVC+ +C G CS+ + D C LC
Sbjct: 55 EQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>12_01_0329 +
2545511-2546683,2546983-2546993,2547377-2547438,
2547882-2548225
Length = 529
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 112 ASPDRPCSQVCHLLQLCTGAXTCSSTH--PYTDGTCCPY 222
A+PD S +CH LC TH +TDG C Y
Sbjct: 451 ATPDASFSWLCHDDDLCAAHCNARRTHTSSHTDGVQCCY 489
>11_01_0662 -
5389746-5390548,5390727-5391368,5391624-5391659,
5392314-5392377
Length = 514
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 502 NSLESEEQQERHHKTEQTHSLRQ 434
NS+ E QE+ H E+TH LRQ
Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84
>02_04_0120 -
19932330-19932366,19932562-19932781,19932876-19932987,
19933071-19933226,19933307-19933471,19933723-19934160,
19934822-19935009,19935465-19935531,19936160-19936332,
19937176-19937308,19937399-19937546,19937622-19937815,
19938855-19939058,19939760-19939834
Length = 769
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 225 CVGTAGTICVWVGTAASGRTSAELQKMADLAAG-AIRTGG 109
C G AG + +WV A+ R S+ ++ A A A+R GG
Sbjct: 175 CSGIAGFVGMWVSVRANVRVSSAARRSAREALQIAVRAGG 214
>10_01_0078 -
1012031-1012084,1012998-1013105,1013610-1013661,
1013926-1016603
Length = 963
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 664 NCIPVDAHCRCNTHQSLHHYEGEVSKHSI-PWLSTPDSIH*NLICRM 527
N I V A+C+ +S H GE++K I P ++ DSI +CRM
Sbjct: 471 NSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSII-VCLCRM 516
>04_04_0836 + 28546414-28547001
Length = 195
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 219 GTAGTICVWVGTAASGRTSAELQKMADLAAGAIRTGGR 106
G A IC + SG +A +A+LAA A R GGR
Sbjct: 5 GDAAAICAQIAAVFSGDPAARPVLVAELAAAAAR-GGR 41
>01_01_0202 +
1753394-1753667,1753934-1753977,1754105-1754152,
1754940-1755002,1755460-1755513,1756073-1756159,
1756253-1756381
Length = 232
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 8 PXATHQWHIPKAGLLLLGVLCCRAPHLXKTKCCL 109
P H W+ P+ G L +G L C A H+ + L
Sbjct: 55 PLHYHAWNHPRLGTLEIGDLLCIAQHVDMAEIVL 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,492,696
Number of Sequences: 37544
Number of extensions: 448430
Number of successful extensions: 1484
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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