Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_G09
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase su... 77 2e-14
D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase su... 77 2e-14
AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical... 77 2e-14
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 31 0.63
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 29 4.4
AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical ... 29 4.4
Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical pr... 28 5.8
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 28 5.8
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 28 5.8
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 28 5.8
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 28 7.7
>D86741-2|BAA21841.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +2
Query: 233 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 412
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 413 YAILGFALSE 442
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>D86740-2|BAA13165.1| 92|Caenorhabditis elegans ATP synthase
subunit protein.
Length = 92
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +2
Query: 233 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 412
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 6 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65
Query: 413 YAILGFALSE 442
YAILGFALSE
Sbjct: 66 YAILGFALSE 75
>AC090999-18|AAK26152.1| 116|Caenorhabditis elegans Hypothetical
protein Y82E9BR.3 protein.
Length = 116
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/70 (57%), Positives = 43/70 (61%)
Frame = +2
Query: 233 AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 412
A R TT KDIDSAAK+ FG+L+IGYARNPSLKQQLFS
Sbjct: 30 AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89
Query: 413 YAILGFALSE 442
YAILGFALSE
Sbjct: 90 YAILGFALSE 99
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 31.5 bits (68), Expect = 0.63
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Frame = -2
Query: 349 CSNTS-SGTSYSHCRCTSTN-EFGSRVNVLSDRCGLEGPHCR---ELCRDSRYHLCMGGY 185
CS+ + S SHC T + RV ++ C P CR +LC SRY M Y
Sbjct: 296 CSHPAFSEVMASHCSLTCGRCDEVERVEEGTEDCEDMTPDCRNYRDLCEHSRYKTLMENY 355
Query: 184 CCKWXHQC-RVAEDGRPGCRGDQDWRQTAFC 95
C K C + D C + + FC
Sbjct: 356 CPKACGHCIPMCRDRHQNC---PQFHEDGFC 383
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 30.3 bits (65), Expect = 1.4
Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 4/145 (2%)
Frame = -2
Query: 508 KVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSG 329
K N L+S E E + T + +L+ GE V + ADDE ++CS +
Sbjct: 62 KKNRLDSTETAEEDN-TRRRRTLKHGEVALPVCSFCKEDQK----ADDEPLKECSECKAK 116
Query: 328 TSYSHCRCTSTNEFGSRVNVLSD----RCGLEGPHCRELCRDSRYHLCMGGYCCKWXHQC 161
C EF + + L+ RC +E C+ D C +CC+ H
Sbjct: 117 YHIRKC-LRYKEEFATNILKLNKWFCPRC-VECDSCKGYIGDPSNIECT--FCCRAWHGS 172
Query: 160 RVAEDGRPGCRGDQDWRQTAFCFXK 86
+ P D DW A C K
Sbjct: 173 CAPKGYSPSGEFDSDWYCIACCRVK 197
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Frame = +1
Query: 94 NKMLSAASPDRPCSQVCHLLQLCTGAXTCSSTHPYTDG------TCCPYTALCSAVLP 249
NK + ++PD C + CS+T P +G CCPY + C A P
Sbjct: 161 NKFICCSNPDGEIMGSCPGGETPLENIQCSATKPCPNGFSCNDKKCCPYASACPAGAP 218
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 530 PTYEVSVYTIWSGQPWNRMFGNLTLIVMQ 616
P + VSVY I PWN +F ++V Q
Sbjct: 29 PLFLVSVYCILKKSPWNMVFYKWLILVFQ 57
>AC006632-1|AAK85466.1| 311|Caenorhabditis elegans Hypothetical
protein F28A10.1 protein.
Length = 311
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 486 KSSRNAIIRQNRPIASDKAKPRMAYENNCCLREGFLA*PMMRE 358
KSSR I ++ I KP E N C+ + FLA PM E
Sbjct: 21 KSSRTLIQPKSSKIQLKSFKPTFFEEWNSCVAQKFLAIPMTAE 63
>Z72502-3|CAA96593.2| 218|Caenorhabditis elegans Hypothetical
protein C08B6.6 protein.
Length = 218
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 655 PVDAHCRCNTHQSLHHYEGEV 593
P+ CRCNT +LH EG V
Sbjct: 98 PIYVLCRCNTTNTLHRREGVV 118
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Frame = -2
Query: 520 VVFLKVNSLESEEQQERHHKT---EQTHSLRQGETQNGV*EQLLLEGGVPGIADD----- 365
V+ +S E E+++ERH + ++T S+R T + + +++ + +A
Sbjct: 9 VIIDSSDSSEDEDRKERHSSSSEVDETASMRS--TDSSEPPRTIIDASLNSMASTVYTST 66
Query: 364 -EGAEDCSNTSSGTSYSHCRCTSTNEFGSR 278
+ S T S T+Y +C++ + + SR
Sbjct: 67 PNSKQSISRTGSSTTYGSSKCSTDDHYRSR 96
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.3 bits (60), Expect = 5.8
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = -2
Query: 454 QTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSR 278
Q+ S + G +G + L G G D+ + CS S G + S C C +
Sbjct: 1512 QSCSCQNGAHCDGADGRCLCPAGFQG---DKCEQKCSEGSFGPACSQQCNCGKYKCDATD 1568
Query: 277 VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWXHQC 161
+ G GP C E CR RY G C+ QC
Sbjct: 1569 GKCICP-VGRHGPLCEEECRPGRY-----GQSCQNKCQC 1601
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.3 bits (60), Expect = 5.8
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = -2
Query: 454 QTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSR 278
Q+ S + G +G + L G G D+ + CS S G + S C C +
Sbjct: 1512 QSCSCQNGAHCDGADGRCLCPAGFQG---DKCEQKCSEGSFGPACSQQCNCGKYKCDATD 1568
Query: 277 VNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWXHQC 161
+ G GP C E CR RY G C+ QC
Sbjct: 1569 GKCICP-VGRHGPLCEEECRPGRY-----GQSCQNKCQC 1601
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 113 PVLIAPAARSAIFCNSALVRPLAAVPTHTQMVPAVPTQLSAVRSF 247
PVL APA + RP+ A P PAVP + A F
Sbjct: 167 PVLAAPAIPAFAPAPIIAPRPVLAAPAIPAFAPAVPAAIPAYAPF 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,783,212
Number of Sequences: 27780
Number of extensions: 360747
Number of successful extensions: 1357
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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