Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_G08
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0612 + 30602862-30603410 59 3e-09
04_03_0150 + 11877714-11878487,11880928-11881245 29 3.2
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299... 29 3.2
02_02_0631 - 12397517-12398452,12398693-12398819,12398971-123991... 29 4.2
08_02_1188 + 25053594-25054941,25055025-25055650 28 5.6
10_08_0554 - 18728485-18728676,18728778-18728859,18729083-187291... 27 9.8
07_01_1023 + 8840754-8842988,8843189-8843362 27 9.8
02_05_1152 + 34494423-34494586,34494725-34494781,34494851-344949... 27 9.8
>01_06_0612 + 30602862-30603410
Length = 182
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = +1
Query: 217 KRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITAACEQHN 396
K ++F+LA + GR +NC IA V +AL Y+ + R KK DM+SLW RI A H
Sbjct: 3 KGKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRHNKKRDMRSLWIERINAGTRLHG 62
Query: 397 ITLFSLREGLDRANIMLDRKSL 462
+ + + ++++ RK L
Sbjct: 63 VCIHCTQAVKKEISLVVARKDL 84
>04_03_0150 + 11877714-11878487,11880928-11881245
Length = 363
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 211 WRKRRVFRLAAHYIGRRRNCYSIAVRNVHR--ALVYATKARKLKKEDMKSLWDVR 369
WR+R +RL AH +G R N V + A+ ++ + +E +++ W R
Sbjct: 219 WRRRASWRLGAHGVGLRVNAAGFVVEDASTVVAVDFSDPTARSSEEPVEAPWRSR 273
>02_03_0161 +
15828887-15828985,15829066-15829686,15829759-15829908,
15829994-15830389,15830455-15830487,15830553-15830693,
15830793-15830924,15830999-15831082,15831159-15831461,
15831543-15831734,15831805-15831942,15832019-15832143,
15832223-15832319
Length = 836
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 590 RFRFIPVG*HLSCPSMNLSVSSLYLATAARASNVFGSHEAKSDKDFLSNII 438
RF +G ++ CP+ VSS YLA N+ + A+ +D+L N +
Sbjct: 173 RFVLFTIG-YILCPTTKPIVSSQYLALLKDIDNIKNINWARITRDYLINCL 222
>02_02_0631 -
12397517-12398452,12398693-12398819,12398971-12399154,
12399303-12399395,12400029-12400077,12400565-12400624,
12400689-12400730,12400840-12400992,12401075-12401206,
12401313-12401408,12401936-12402079,12402234-12402308,
12403896-12404021
Length = 738
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +1
Query: 418 EGLDRANIMLDRKSLSDLASWEPKTFEALAAVAKYKLETDRFIDGQDKC 564
EGL++ ++ + R +WEP+ A ++ E D + D C
Sbjct: 478 EGLEKVDVWVHRPGSDVAVTWEPRKGRARCQDSRILRENDVYCDSPKSC 526
>08_02_1188 + 25053594-25054941,25055025-25055650
Length = 657
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 196 GPDEFWRKRRVFRLAAHYIGRRRN 267
G D WR+RR F A IGR R+
Sbjct: 393 GSDSGWRRRRAFETEAAAIGRARH 416
>10_08_0554 -
18728485-18728676,18728778-18728859,18729083-18729170,
18729286-18729327,18729747-18729858
Length = 171
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 361 DVRITAACEQHNITLFSLREGLDRANI-MLDRKSLSDLASWE-PKTFEALAAVAKYKLET 534
D +T + I+L E ++A K L+D+ASWE K E A + KY+
Sbjct: 52 DALLTTVATEKRISLIKAWEENEKAKADNKAAKKLADIASWENSKVAEIEAEIKKYQEYL 111
Query: 535 DR 540
+R
Sbjct: 112 ER 113
>07_01_1023 + 8840754-8842988,8843189-8843362
Length = 802
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 361 DVRITAACEQHNITLFSLREGL-DRANIMLDRKSLSDL-ASWE 483
++ ITA H+++ +S +EGL + AN ++ RK+L+ + WE
Sbjct: 302 NLMITAGVWGHDVSNYSAKEGLCEEANDIIPRKNLTIVDGVWE 344
>02_05_1152 +
34494423-34494586,34494725-34494781,34494851-34494908,
34494989-34495088,34495270-34495383,34495588-34495810,
34496112-34496246,34496575-34496679,34496906-34497001,
34497387-34497516,34497933-34497983,34498538-34498648,
34499267-34499376,34499490-34499655,34499740-34499820,
34499907-34499975,34500099-34500212,34500699-34500760,
34500894-34500990,34501152-34501271
Length = 720
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 494 NVFGSHEAKSDKDFLSNIILALSKPSLKENSVILCCSQ 381
+VF K D + LS + L L KP+ K V+ CS+
Sbjct: 213 SVFSDIHHKQDTELLSELRLFLRKPAEKPLHVVHICSE 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,364,763
Number of Sequences: 37544
Number of extensions: 279746
Number of successful extensions: 547
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -