Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G08
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               29   3.3  
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.6  

>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 385 EQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAKYKLE 531
           EQH+ TLFS  E LD  N     K + D ++ E   ++ LA+ + ++ E
Sbjct: 621 EQHSETLFSFLEILDDFNSSTIAKPMDDSSAVEQMEYQPLASTSDFRSE 669


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
 Frame = +1

Query: 334 KKEDMKSLWDVRITAACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAV 513
           +K+ MK++WD+      EQ+N  L  LR   +R    L+ ++ SD A ++ + FE    +
Sbjct: 398 EKDKMKAMWDLETEKVKEQNN-KLNCLRRDYERKFNSLE-EARSD-AMFQRQQFEKEKQL 454

Query: 514 AKYKLE------TDRFIDGQDKCHPTGINLNLKDVMLEAWLNEKK 630
           A  K++      T+  ++ +        +LN K  +LE  + EKK
Sbjct: 455 ALLKIQESSTRLTNSKLEREKALQIAEGDLNKKKDLLELEIAEKK 499


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 590  RFRFIPVG*HLSCPSMNLSVSSLYLATAARASNVFGSHEAKSDK 459
            R    P G  L  PSM  S +S    T+A  S+ +G  EAK  K
Sbjct: 1613 RLALTPTGPALMSPSMRDSSASKIAYTSAGQSSSWGQDEAKPSK 1656


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,019,897
Number of Sequences: 59808
Number of extensions: 330356
Number of successful extensions: 690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)