Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G08
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117203-7|CAB55109.1|  191|Caenorhabditis elegans Hypothetical ...    53   2e-07
AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF022971-3|AAG23977.1|  474|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z92837-4|CAH10846.1|  193|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U41296-1|AAA93297.1|  579|Caenorhabditis elegans Steroid hormone...    27   8.7  
AY204170-1|AAO39174.1|  579|Caenorhabditis elegans nuclear recep...    27   8.7  
AL031630-16|CAA20996.1|  158|Caenorhabditis elegans Hypothetical...    27   8.7  
AF067936-1|AAC19212.2|  579|Caenorhabditis elegans Nuclear hormo...    27   8.7  

>AL117203-7|CAB55109.1|  191|Caenorhabditis elegans Hypothetical
           protein Y48C3A.10 protein.
          Length = 191

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +1

Query: 199 PDEFWRKRRVFRLAAHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKSLWDVRITA 378
           PD + ++ R+ R  A      R+    A R   +   Y    R+ ++   K   + R+  
Sbjct: 26  PDVWMKRERLNRFTAWQYASERSTVKGAYRKEDKIFAYLNMQRQDERNLEKFHAEERVRT 85

Query: 379 ACEQHNITLFSLREGLDRANIMLDRKSLSDLASWEPKTFEALAAVAK 519
           A E+H++     +  L +++I+LD   LS LA +EP++F +L A AK
Sbjct: 86  ALEEHDMEYSKFKSILSQSHILLDNICLSQLAIYEPRSFRSLVAFAK 132


>AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical
           protein T06A1.5 protein.
          Length = 476

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -3

Query: 319 WLHKLELGEHFELQSNNNFV-----DGQYNERLI*KPVAFSKI 206
           WLH  EL EH++LQ  N F       G+Y+ +L+   VA  ++
Sbjct: 226 WLHFAELVEHYKLQGVNKFFIYIREIGEYDMKLVKSYVASGEV 268


>AF022971-3|AAG23977.1|  474|Caenorhabditis elegans Hypothetical
           protein C31B8.7 protein.
          Length = 474

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 319 WLHKLELGEHFELQSNNNF 263
           WLH +EL EH++LQ  N F
Sbjct: 224 WLHFVELVEHYKLQGVNKF 242


>Z92837-4|CAH10846.1|  193|Caenorhabditis elegans Hypothetical
           protein R03E1.4 protein.
          Length = 193

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 481 EPKTFEALAAVAKYKLETDRFIDGQDKCHPTGINLNLKDVMLEAWLN 621
           EP + E +++ A+Y+LE  + +    +        N K V+LEA++N
Sbjct: 88  EPPSSEIVSSQAQYRLENMKLLSNVPETFNVAGPSNSKMVLLEAYMN 134


>U41296-1|AAA93297.1|  579|Caenorhabditis elegans Steroid hormone
           receptor-like proteinprotein.
          Length = 579

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 463 SDLASWEPKTFEALAAVAKYKLETDRFIDGQDKC--HPTGINLNLKDVMLEAWLNEK 627
           +D ASW P+ +    A  + K +   F + +D C   P+  NLN + +   + L  +
Sbjct: 362 ADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNERSMKTVSMLESR 418


>AY204170-1|AAO39174.1|  579|Caenorhabditis elegans nuclear receptor
           NHR-47 protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 463 SDLASWEPKTFEALAAVAKYKLETDRFIDGQDKC--HPTGINLNLKDVMLEAWLNEK 627
           +D ASW P+ +    A  + K +   F + +D C   P+  NLN + +   + L  +
Sbjct: 362 ADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNERSMKTVSMLESR 418


>AL031630-16|CAA20996.1|  158|Caenorhabditis elegans Hypothetical
           protein Y38H6C.18 protein.
          Length = 158

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 241 AHYIGRRRNCYSIAVRNVHRALVYATKARKLKKEDMKS 354
           AHY  R R   SI V    + +    + RK+ K+DM+S
Sbjct: 76  AHYRARARMQLSIEVSKKMQEITKEKRIRKMAKKDMRS 113


>AF067936-1|AAC19212.2|  579|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 47 protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 463 SDLASWEPKTFEALAAVAKYKLETDRFIDGQDKC--HPTGINLNLKDVMLEAWLNEK 627
           +D ASW P+ +    A  + K +   F + +D C   P+  NLN + +   + L  +
Sbjct: 362 ADYASWIPQDYGHPTAGHEGKSDMHNFFEARDFCVGRPSSCNLNERSMKTVSMLESR 418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,786,256
Number of Sequences: 27780
Number of extensions: 263857
Number of successful extensions: 596
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)