Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G07
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...   148   4e-36
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...   143   1e-34
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...   137   1e-32
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    28   7.5  

>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score =  148 bits (359), Expect = 4e-36
 Identities = 92/208 (44%), Positives = 113/208 (54%), Gaps = 8/208 (3%)
 Frame = +1

Query: 139 SYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA-----SYTSAERKTWSQGTSPL 303
           SY+SGY  S+ D+ VF  +  APAA+  +V RWY+ I+     S  +AE +     ++  
Sbjct: 44  SYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAEGEGVKVESTAC 103

Query: 304 XXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKS 483
                               VDLFG                  +A A K S K     KS
Sbjct: 104 SVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE------RAAAVKASGKKKESGKS 157

Query: 484 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 663
           S+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYGI KLQIM  I DD VSV
Sbjct: 158 SVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSV 217

Query: 664 DLLTEK---IQEFEDFVQSVDIAAFNKI 738
           D L E     +   +F+QS DI AFNKI
Sbjct: 218 DSLIEDYFYTEPANEFIQSCDIVAFNKI 245


>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score =  143 bits (347), Expect = 1e-34
 Identities = 88/207 (42%), Positives = 111/207 (53%), Gaps = 7/207 (3%)
 Frame = +1

Query: 139 SYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTSAERKTWSQGTS----PLX 306
           +YVSG   S+ D++VF  V   P A  P+  RWY+ +A+  ++     + G +       
Sbjct: 25  TYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPGGGAA 84

Query: 307 XXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSS 486
                              +DLFG                  +  A K S K     KSS
Sbjct: 85  SSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD-------ERAASKASSKKKESGKSS 137

Query: 487 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVD 666
           +LLDVKPWDDETDMK++E  VR+++MEGL WGASKLVPVGYGI KLQIM  I DD VSVD
Sbjct: 138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVD 197

Query: 667 -LLTEKIQE--FEDFVQSVDIAAFNKI 738
            L+ E + E    +FVQS DI AFNKI
Sbjct: 198 SLIEEHLTEEPINEFVQSCDIVAFNKI 224


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score =  137 bits (331), Expect = 1e-32
 Identities = 88/211 (41%), Positives = 108/211 (51%), Gaps = 11/211 (5%)
 Frame = +1

Query: 139 SYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI-----ASYTSAER---KTWSQGT 294
           SY+SGY  S  D+ V+     AP+++  +V RW+  I      S  +A+    K  S   
Sbjct: 25  SYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTADGQGVKVESTAV 84

Query: 295 SPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALI 474
                                  VDLFG                  +A A K S K    
Sbjct: 85  PSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE------RAAAVKASGKKKES 138

Query: 475 AKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDK 654
            KSS+LLDVKPWDDETDM ++E  VR ++MEGLLWGASKLVPVGYGI KLQIM  I DD 
Sbjct: 139 GKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDL 198

Query: 655 VSVDLLTEK---IQEFEDFVQSVDIAAFNKI 738
           VSVD L E     +   +++QS DI AFNKI
Sbjct: 199 VSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = +1

Query: 148 SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 249
           +G+ PS AD+ VF  +       G+      PHVLRW + I
Sbjct: 92  NGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,899,208
Number of Sequences: 37544
Number of extensions: 395955
Number of successful extensions: 951
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)