Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_G04
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 40 5e-04
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 37 0.003
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 36 0.005
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 32 0.10
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 30 0.31
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces... 30 0.41
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 28 1.7
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 28 1.7
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 2.2
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.8
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 26 5.0
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.0
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 6.7
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 39.5 bits (88), Expect = 5e-04
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Frame = +1
Query: 379 FQWLLLLSCGAVYAVCALSTTTLS--FVLPATK--NDFELSSSDKGRLTATPLIGMCVGS 546
F+ L ++C VY+ AL +T S F +PA F +S + L G G
Sbjct: 130 FRKKLKITC--VYSYVALCSTFASSVFSVPAEAITTIFHISLTVSLLTMTVFLCGYIAGP 187
Query: 547 YFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIGATGLIFPY 726
W L++ GRK +V + + CRFFSGF ++
Sbjct: 188 IVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQTIMMCRFFSGFFASAPLTVVAAA 247
Query: 727 FGDFLSLRH 753
F D S +H
Sbjct: 248 FADMYSNKH 256
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 37.1 bits (82), Expect = 0.003
Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
Frame = +1
Query: 379 FQWLLLLSCGAVYAVCALSTTTLSFVLPATK--NDFELSSSDKGRLTATPLIGMCVGSYF 552
F+ L +C Y S + F +PA F +S + L+G C G
Sbjct: 131 FKRKLKTTCILAYVALCSSFASSVFAVPAEAITTVFHISLTVSLLTMTVFLLGYCSGPII 190
Query: 553 WGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGF 690
W L++ GRK +V + + CRFF+GF
Sbjct: 191 WAPLSELSGRKPPILIGMLGFGIFNISVAVGKDIQTIMMCRFFAGF 236
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/77 (22%), Positives = 29/77 (37%)
Frame = +1
Query: 523 LIGMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIG 702
++G C+G W +++ GRK + Q + CRFF G+G
Sbjct: 184 MLGYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIMICRFFGGYGACV 243
Query: 703 ATGLIFPYFGDFLSLRH 753
++ F D R+
Sbjct: 244 PLCVVAAAFADMYPNRY 260
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 31.9 bits (69), Expect = 0.10
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 3/118 (2%)
Frame = +1
Query: 385 WLLLLSCGAVYAVCALSTTTLS---FVLPATKNDFELSSSDKGRLTATPLIGMCVGSYFW 555
W+L + G + T +S V+ + EL++ K +T+ +G +G
Sbjct: 88 WVLAFAAGIGGLLFGYDTGVISGALVVIGTSLGGHELTNGGKEFITSATSLGALLGGIIA 147
Query: 556 GNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIGATGLIFPYF 729
G LAD GRK + RF G+G +G LI P +
Sbjct: 148 GALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWG-VGIASLIIPLY 204
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 30.3 bits (65), Expect = 0.31
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +1
Query: 352 ALHHAGYGCFQWLLLLSCGAVYA---VCALSTTTLSFVLPATKNDFELSSSDKGRLTATP 522
A++ G+G +QW L G + + + T+ + L + LT +
Sbjct: 68 AMNEIGFGRYQWYLFFVAGFGWMSDNIWPVCTSLILMRLDEVDGPHPPAEGRAPYLTLSQ 127
Query: 523 LIGMCVGSYFWGNLADARGRK 585
+G+ VG+ W AD GR+
Sbjct: 128 NLGLLVGAMVWSLSADTIGRR 148
>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 538
Score = 29.9 bits (64), Expect = 0.41
Identities = 16/69 (23%), Positives = 24/69 (34%)
Frame = +1
Query: 529 GMCVGSYFWGNLADARGRKXXXXXXXXXXXXXXXXSSVVQSFSGFLACRFFSGFGIIGAT 708
G G W +++ GRK +V + + CRFFSGF
Sbjct: 145 GFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDVQTVMICRFFSGFCASSPL 204
Query: 709 GLIFPYFGD 735
++ F D
Sbjct: 205 SVVAAAFAD 213
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 370 YGCFQW--LLLLSCGAVYAVCALSTTTLSFVLPATKNDFELSSSDKGRLTATPLIGMCVG 543
YG +++ + + G + + + T L + LPA + F ++ L+A P IG +
Sbjct: 103 YGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVITNLLSAVPFIGDDLV 162
Query: 544 SYFWGNLA 567
WG +
Sbjct: 163 HLLWGGFS 170
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -1
Query: 753 VPQRQ-KVTEVREDEARGSDDSEPGEEPASQEPREGLHNAGQERGQSIQK*SSNDGDLSA 577
VP ++ K V+E+E D+S E P +EP A E S+ + +D S
Sbjct: 132 VPAKKVKKNTVKEEEIEKDDESATTETPVKEEPTGEETEADHEEKASVDHGNFSDKTTSE 191
Query: 576 SS 571
+S
Sbjct: 192 AS 193
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -1
Query: 744 RQKVTEVREDEARGSDDSEPGEEPASQEPREGLH-NAGQERGQSI 613
++ +++ +E G+DD + G+EP +E GL N+ QE+ ++
Sbjct: 676 KKNASQITNNENNGNDDIKKGDEP--EEEHVGLRKNSTQEKNANL 718
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 649 SFSGFLACRFFSGFGIIG 702
S SGF+A RFF+G I G
Sbjct: 255 SASGFIALRFFNGLAIAG 272
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 684 GEEPASQEPREGLHNAGQERGQSIQK*SSNDGDLSASSVRQVT 556
G +P+S + E N ER +S N G +S++S + T
Sbjct: 538 GTDPSSSKTTENNGNQQSERTESADGKKDNSGSISSNSSKTFT 580
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 615 CSGRVPVQRCAVLLWVPGLQVLLRVRNHRSH 707
C+ + C +LLW LQ L R+ R H
Sbjct: 348 CTYMAAMPACVILLWFEPLQCWLYKRDKRKH 378
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = -1
Query: 405 AGQQQQPLEASV 370
AGQQQQPL+AS+
Sbjct: 624 AGQQQQPLQASI 635
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,673
Number of Sequences: 5004
Number of extensions: 52207
Number of successful extensions: 190
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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