Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G01
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce...    27   2.4  
SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa...    27   3.2  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   4.3  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   5.6  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   5.6  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   7.5  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.9  

>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 303 REVIMLYAWCVLACVTAADAL 365
           R  +M Y WCV  CVTAA+++
Sbjct: 100 RRRLMAY-WCVYGCVTAAESI 119


>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 129

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 716 LHESKDGQIEEEIHQESSRSGVSVGAADDHIILVVNYAKALLQPXYYLFP 567
           LHE    ++E+++  +SSR     G+A+ H+ ++ N    L +   Y  P
Sbjct: 63  LHEPVRREMEQKLASQSSRPLALGGSANFHLDILANREAVLDETDIYAAP 112


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/80 (18%), Positives = 32/80 (40%)
 Frame = -2

Query: 581 YYLFPNSMSHHRSINRHEDQSFNSVPTVIFYHEGP*ELTQVNSMPDLLELSIAHKSNFSR 402
           YY   N   +   + + ED+   S P    +      L   +++  LL+    ++S  + 
Sbjct: 214 YYTLENDSENINEVKKFEDEEDTSTPNTSSFQNNSSSLDLSDNLSYLLQYLEGNRSKINA 273

Query: 401 WASDVXYASPDTQRIRRRHA 342
             +DV     D ++ + + A
Sbjct: 274 TDADVKQLLSDVKKNKSKWA 293


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 534 SVDAAMMGHGVRKEVIXRLQKRFGVIYNEDNVIISGT-HTHSTPGGFLMDFLFDLPILGF 710
           +VDA+ + +G ++  +         IYN +    S   H  STPG    +FLFD+  +  
Sbjct: 384 AVDASSLSNGWKELFVNANDGSNEGIYNTEYPFFSVQFHPESTPGPRDTEFLFDV-FIDV 442

Query: 711 VKETYIAYVLGIYK 752
           VK +  A  L  +K
Sbjct: 443 VKRSADAKSLQPFK 456


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 692 IEEEIHQESSRSGVSVGAADDHIILVVNYAKALLQPXYY 576
           I EE+ QE ++  V VG +  H   VVN     L+P Y+
Sbjct: 57  ITEEVSQEPNQKNVIVGISGLH---VVNLPTLTLKPLYW 92


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 239 GRYYIHNCFLKXWINNKNKASKR--SYNVIRVVRACVRDGGGCAAC 370
           GRYY + C  K W ++ NK+S       + R+ R    D   C  C
Sbjct: 205 GRYYCNKC--KLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTC 248


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 305 SSKLCSCYLSXTSENNYVCNNVPLISHFTAKXTFTNRQRKQQH*KTTSPTVL 150
           SS  C   LS +S NN V        +F  +    N  +  QH  T+ P+VL
Sbjct: 19  SSNFCFRNLSQSSNNN-VSYASSSNRNFVPQNVLNNEYQSFQHSSTSQPSVL 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,193
Number of Sequences: 5004
Number of extensions: 61230
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)