Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G01
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0752 - 24909954-24910502,24914620-24914786,24914916-249149...   119   2e-27
06_03_0878 + 25606788-25606926,25607205-25607279,25607362-256074...    29   4.5  
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    29   5.9  
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733...    28   7.8  

>01_05_0752 -
           24909954-24910502,24914620-24914786,24914916-24914979,
           24915472-24915597,24915673-24915943,24916032-24916287,
           24916386-24916754,24916850-24916891,24917474-24917682,
           24918074-24918109,24918509-24918918,24919314-24919438,
           24920267-24920333,24921596-24921652
          Length = 915

 Score =  119 bits (287), Expect = 2e-27
 Identities = 70/169 (41%), Positives = 100/169 (59%), Gaps = 14/169 (8%)
 Frame = +3

Query: 315 MLYAWCVLAC--VTAADALRVGAGIXDVTGPPAEIAFMGYAQLEQIGHGIHLRQFSRAFV 488
           +L A  +L C  V +A    VG G  D+TGP A++  MGYA  EQI  GIH R  SRAF+
Sbjct: 127 LLLALVLLNCSLVLSASPYLVGMGSFDITGPAADVNMMGYANTEQIASGIHFRLKSRAFI 186

Query: 489 IEDNSGDTVKRLVFVSVDAAMMGHGVRKEVIXRLQKR------------FGVIYNEDNVI 632
           + + +G   KR+VFV++DA M    V  +V+ RL+ R            +G +YNE+NV 
Sbjct: 187 VAEPNG---KRVVFVNIDACMASQIVTIKVLERLKARNIEEPRCPHVHWYGDLYNENNVA 243

Query: 633 ISGTHTHSTPGGFLMDFLFDLPILGFVKETYIAYVLGIYKSIXIXHSRL 779
           ISG HTH+ PGG+L   ++ +  LGFV++++   V GI +SI   H+ L
Sbjct: 244 ISGIHTHAGPGGYLQYVVYIVTSLGFVRQSFDVIVDGIEQSIVEAHNNL 292


>06_03_0878 +
           25606788-25606926,25607205-25607279,25607362-25607426,
           25607504-25607606,25607712-25607762,25608271-25608424,
           25608781-25608925,25609039-25609144,25609267-25609415
          Length = 328

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 525 VFVSVDAAMMGHGVRKEVIXRLQKRFGVIYNEDNVIISG 641
           +F S+   +M HG  K +   L+KR+    +E +V+ +G
Sbjct: 229 LFFSIAKKLMSHGAEKVLYLTLEKRYNFSMDELDVVANG 267


>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 9/140 (6%)
 Frame = +3

Query: 285 TRTKLRREVIMLYAWCVLACVTAADALRVGAGIXDVT--GPPAE--IAFMGYAQ-LEQIG 449
           T   L R ++  + W V A +T A  L  G G   +   G P    +A +G    L  + 
Sbjct: 409 TMMLLGRVILRKFGWGVAATITPAVLLLTGVGFFSLILFGEPLTPLMATLGMTPLLAAVY 468

Query: 450 HGIHLRQFSRAFVIEDNSGDTVKRLVFVSVDAAM--MGHGVRKEVIXRLQKRFGVIYNED 623
            G     FS++   + +  D  K + ++ +D  M   G      V   L K  G +  + 
Sbjct: 469 VGAMQNIFSKS--AKYSLFDPCKEMAYIPLDEDMKVKGKAAIDVVCNPLGKSGGALIQQF 526

Query: 624 NVIISGTHTHSTP--GGFLM 677
            ++  G+  +STP  GG L+
Sbjct: 527 MILSFGSLANSTPYLGGILL 546


>01_06_0061 -
           26071984-26072343,26072792-26073139,26073228-26073371,
           26073454-26073723,26075019-26075825
          Length = 642

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
 Frame = +3

Query: 285 TRTKLRREVIMLYAWCVLACVTAADALRVGAGIXDVT--GPPAE--IAFMGYAQ-LEQIG 449
           T   L R ++  + W V A +T    L  G G   +   G P    +A MG    L  + 
Sbjct: 431 TMMLLGRIILRKFGWGVAAMITPTVLLLTGVGFFSLILFGQPLTPMLATMGMTPLLAAVY 490

Query: 450 HGIHLRQFSRAFVIEDNSGDTVKRLVFVSVDAAM--MGHGVRKEVIXRLQKRFGVIYNED 623
            G     FS++   + +  D  K + ++ +D  M   G      V   L K  G +  + 
Sbjct: 491 VGALQNIFSKS--AKYSLFDPCKEMAYIPLDEDMKVKGKAAIDVVCNPLGKSGGALIQQF 548

Query: 624 NVIISGTHTHSTP--GGFLM 677
            ++  G+  +STP  GG L+
Sbjct: 549 MILTFGSLANSTPYLGGILL 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,066,903
Number of Sequences: 37544
Number of extensions: 439923
Number of successful extensions: 1182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)