Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G01
         (825 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)               29   4.6  
SB_20266| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)                   29   6.1  
SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)      29   6.1  
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_15995| Best HMM Match : DUF1388 (HMM E-Value=3.9e-12)
          Length = 1108

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 260 CFLKXWINNKNKASKRSYNVIRVVRACVRDGGGCAA 367
           C  +  + N ++ +KR   ++ V+ A   DGGGC+A
Sbjct: 481 CSRQELVENADRINKRCEGMVLVMSAIDVDGGGCSA 516


>SB_20266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 203 TNRQRKQQH*KTTSPTVLPGFTIR 132
           T R R Q+H +TT P V+P  T+R
Sbjct: 88  TQRPRAQKHVRTTHPVVIPPPTVR 111


>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
          Length = 729

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 281 LSXTSENNYVCNNVPLISHFTAKXTFTNRQRKQQH 177
           L  T++++YVCN       F  K + T+R   Q+H
Sbjct: 32  LPTTNQHSYVCNGPENACFFVCKLSKTSRTNDQKH 66


>SB_11124| Best HMM Match : Nuclear_move (HMM E-Value=1.54143e-44)
          Length = 376

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +3

Query: 306 EVIMLYAWCVLACVTAADALRVGAGIXDVTGPPAEIAFMGYAQLEQIGHG-IHLRQFSRA 482
           E + +  + V+  +   D   +G G+ ++ G   ++  MGY  +E IG+G + +  +   
Sbjct: 271 EDVEMMGYRVVEMIGYGDVEMMGYGVVEMIGY-GDVEMMGYGDVEMIGYGDVEMMGYG-- 327

Query: 483 FVIEDNSGDTVKRLVFVSVDAAMMGHG 563
            V+E      V+ + +  V+  MMG+G
Sbjct: 328 -VVEMMGYGDVEMMGYGDVE--MMGYG 351


>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 569 PNSMSHHRSINRHEDQSFNSVPTVIFYHEG 480
           PN  +HHR+IN  + +S NS  +++F  +G
Sbjct: 324 PNHHAHHRNINNIDYESDNSDTSMLFDLDG 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,184,427
Number of Sequences: 59808
Number of extensions: 493199
Number of successful extensions: 1163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)