Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_G01
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   2.0  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   4.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   7.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
 Frame = -2

Query: 704 KDGQIEEEIHQESSRSGVSVGA-ADDHIIL-----VVNYAKALLQPXYYLFPNSMSHHRS 543
           +D  IE EI  E S++ VS G+  ++H        V  Y        YY++         
Sbjct: 292 RDSPIEPEI--EISQNSVSTGSDKENHKTEEPNDEVATYDNTPRDFPYYMYSREQYSQSH 349

Query: 542 INRHEDQSFNSVPTV 498
           +  +E++ F + PTV
Sbjct: 350 LISNENRDFQTTPTV 364


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 168 NITNSFAGFYNSHNTKYK 115
           N  N++  + N++NT YK
Sbjct: 93  NYNNNYNNYNNNYNTNYK 110


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 539 NRHEDQSFNSVPTVIFYHEGP*ELTQVN--SMPDLLELSIAHKSNFSR 402
           ++H    F   PT++++H     +  +N  SM  + ++ +A     SR
Sbjct: 18  DKHRAPKFLGQPTIVYFHVTVLSIDSINEESMTYVADIFLAQSWRDSR 65


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 242 VPLISHFTAKXTFTNRQR 189
           +PL+S F+     +N+QR
Sbjct: 236 IPLVSFFSTSPELSNKQR 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,277
Number of Sequences: 438
Number of extensions: 5111
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)