Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_F24
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    28   2.4  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    28   3.2  
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical...    27   7.4  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    26   9.8  
U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +2

Query: 17  FENNTW-SYESTLINMFKFLAVRCYSCVCCRKAFGV*VPSCLHRPSCRCIYFTCCVLCIF 193
           + NN W S+ + L     F     Y CV  +K     +         R I+  CC++C F
Sbjct: 197 YYNNDWQSWNNYLFVAIMFFLYITY-CVLIKK-----LAHGQKSKKSRAIFIQCCIICFF 250

Query: 194 RLLTSWLF-CLHLLGP 238
              T+ ++  L L+ P
Sbjct: 251 NTATALIYNALSLMTP 266


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 315 SVSHNRNSIAFKIAFWLSISERSKCMGPSRCRQNSQEVSR--RNMQSTQQ 172
           SVS + N +      +  +S  S+C+G  +C  NSQ +S   +  Q TQQ
Sbjct: 381 SVSCSTNQVCISNQCYNYVSIGSQCVGSQQCLSNSQCISSICQCPQGTQQ 430


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
            R10E11.1b protein.
          Length = 2056

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 270  WLSISERSKCMGPSRCRQNSQ-EVSRRNMQSTQQVKYMQRQLGRCRQLGTHTP 115
            WL + E    + P+R +  SQ  +   N+Q+ QQ +  Q+Q G  R  G   P
Sbjct: 1890 WLRMRENQNLV-PNRMQGYSQMSMGSSNLQNLQQQQLQQQQAGAMRGGGGFAP 1941


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
            R10E11.1a protein.
          Length = 2045

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 270  WLSISERSKCMGPSRCRQNSQ-EVSRRNMQSTQQVKYMQRQLGRCRQLGTHTP 115
            WL + E    + P+R +  SQ  +   N+Q+ QQ +  Q+Q G  R  G   P
Sbjct: 1879 WLRMRENQNLV-PNRMQGYSQMSMGSSNLQNLQQQQLQQQQAGAMRGGGGFAP 1930


>AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.14 protein.
          Length = 662

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 17  FENNTWSYESTL-INMFKFLAVRCYSCVCCRKAFGV*VPSCLHRPSC 154
           F N  + Y S+L I+M K      YSC  C K +   +   +H+  C
Sbjct: 360 FCNKKYPYASSLYIHMRKHTEKSAYSCDGCGKPYSQKISLNIHQDQC 406


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 92  CVCCRKAFGV*VPSCLHRPSCRCIYFTCCVLC 187
           C CC    G     C  RP C C    CC  C
Sbjct: 77  CGCCGCGCGC----CCCRPRCCCCCRRCCTCC 104


>U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical
           protein H03E18.2 protein.
          Length = 204

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 194 RLLTSWLFCLHLLGPIHLLRSLIDNQKAILN 286
           +LL S LFCLHL GP   L S +D +K +++
Sbjct: 171 QLLVS-LFCLHLSGP---LFSWLDTEKKLIS 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,572,995
Number of Sequences: 27780
Number of extensions: 113626
Number of successful extensions: 394
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)