Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_F23
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  36   0.034
SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      29   3.9  
SB_2243| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  

>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 30/102 (29%), Positives = 36/102 (35%)
 Frame = +1

Query: 163  PTIPTMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSCTASPKPHRRLQRA 342
            PT  T  T TP  TA    T E  +   TT  TTTPE            + KP     + 
Sbjct: 1772 PTTTTTTTTTPETTAPRTTTPETTTPETTTPRTTTPE------------TTKPRTTTPKT 1819

Query: 343  RCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRP 468
                   AA+  P+P T+        T  N  T   A  K P
Sbjct: 1820 TTPKKTTAAKKAPLPVTHATTSHAPSTTENPTTARPATTKAP 1861


>SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 26/61 (42%), Positives = 33/61 (54%)
 Frame = +3

Query: 309 QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTE 488
           Q E A A S   V +P+R  QT +  S  P+Q N+V  PQ  E P  S T A  LA+P E
Sbjct: 625 QHELAVADSP-VVCLPER--QTHSGESATPEQTNQVVEPQM-EEPQGS-TSAQHLAEPDE 679

Query: 489 K 491
           +
Sbjct: 680 Q 680


>SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 201 YGSGDSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQ 326
           YG    + G  V++ Y  P Y   A  GG  A ++ QP A +
Sbjct: 142 YGRNAPHPGSTVLTVYRRPTYRAIATPGGACATLFLQPGAGR 183


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 26/85 (30%), Positives = 33/85 (38%)
 Frame = +1

Query: 163 PTIPTMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSCTASPKPHRRLQRA 342
           P   T  T TP  T     T E  +   TT  TTTPE      P+  TA+ K    +  A
Sbjct: 181 PETTTPRTTTPVTTTPRTTTPETTTPETTTPRTTTPE---TTTPKKTTAAKKAPLPVTHA 237

Query: 343 RCTYLIVAARPLPIPATYRNKKTKS 417
             ++   A      P T R   TK+
Sbjct: 238 TTSH---APSTTENPTTARPATTKA 259


>SB_2243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/56 (37%), Positives = 25/56 (44%)
 Frame = -2

Query: 392 VAGIGKGLAATIRYVHLAR*RRLCGFGLAVHERGHTTAHSSGVVVRIVVTAHDQAS 225
           VAG+      T  Y H AR R   G+G A   RG  T H  GV  R   T +  A+
Sbjct: 12  VAGVWTRSTVT-GYRHAARSR---GYGHAARSRGIDTQHGHGVWTRSTFTGYRHAA 63


>SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = +1

Query: 274 LWAVVWPRSCTASPKPHRRLQRARCTYLIV--AARPLPIPATYRN 402
           +W + W  S    P+ HRR +  R  + +      P   P T +N
Sbjct: 703 VWTLAWTVSTPLIPQEHRRTEHRRTVWTLAWYGVHPTHTPGTQKN 747


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,634,534
Number of Sequences: 59808
Number of extensions: 449638
Number of successful extensions: 1290
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)