Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_F23
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical ...    37   0.017
Z74032-2|CAA98466.2|  248|Caenorhabditis elegans Hypothetical pr...    35   0.052
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical...    29   2.6  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    29   4.5  
U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical p...    29   4.5  
U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical p...    29   4.5  
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    28   6.0  
L13200-7|AAA28189.1|  206|Caenorhabditis elegans Prion-like-(q/n...    28   6.0  
Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   7.9  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   7.9  

>AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical
           protein F55A12.6 protein.
          Length = 423

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 159 YPYNPYYGNVDSLSYGSGDSNR--GGLVMSRYYNPYYN-PRAVGGGMAAFMYRQPEA 320
           Y  N YYGN     YG+G  N+  GG   + YYN YYN     GG    + Y Q ++
Sbjct: 138 YYGNGYYGNGYGNGYGNGYYNQYNGGYGGNGYYNQYYNGNNYYGGNRGYYNYNQGQS 194


>Z74032-2|CAA98466.2|  248|Caenorhabditis elegans Hypothetical
           protein F35B12.3 protein.
          Length = 248

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
 Frame = +3

Query: 126 VMMSCALLVQAYPYNPYYGNVDSLSYGSGDSNRGGLVMSRYYNPYY-NPRAVGG--GMAA 296
           +++SC +L  AYPY+  YGN D   Y              Y   Y  NP   GG  G   
Sbjct: 7   LVVSCGILAAAYPYSQQYGNYDQ-QYSQQSQYYPSSGQQGYRGGYQSNPGMQGGYQGNGQ 65

Query: 297 FMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSP 455
             Y+  +  Q    GQ     R  Q      Y   Q ++  YP++ ++ ++SP
Sbjct: 66  DSYQDFQGYQGYQRGQG--GQRGYQ-----GYQSNQRSQGSYPERYDSSMYSP 111


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 27/115 (23%), Positives = 36/115 (31%), Gaps = 2/115 (1%)
 Frame = +1

Query: 166 TIPTMETWTPFPTARAIVTEEAWS*AVTTILT--TTPELWAVVWPRSCTASPKPHRRLQR 339
           T+PT  T TP  T     T    +   TT  T  TT        P + T +         
Sbjct: 215 TVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTT 274

Query: 340 ARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRPNWLTPLKRSNCT 504
              T       P     T +  K+ + T    +T S+         TP   S CT
Sbjct: 275 TPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPTTTTTTPKTPFDTSKCT 329


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 258 YYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE 437
           Y NP+A  G    +  +Q +    P     Y P R++Q     +Y P+Q+ +  Y QQ +
Sbjct: 27  YQNPQAGYG----YNNQQQQQQGRPQQYAGYPPQRQQQQYNMNAYAPRQQQQQQYQQQQQ 82

Query: 438 N 440
           N
Sbjct: 83  N 83


>AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical
           protein Y73F8A.17 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 123 FVMMSCALLVQAYPYNPYYGNVDSLSYGS 209
           F M   A     YPY+PYY     L +GS
Sbjct: 311 FAMNQKASFANQYPYHPYYHQYSQLDHGS 339


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 390  YVPQQENEVYYPQQPENPIFSPTQATELADPTEKIE 497
            YVPQ+      P  PE    +P+Q   + +PT  IE
Sbjct: 1812 YVPQETQAPIAPSNPEPVQPNPSQTVSIPEPTGNIE 1847


>Z81587-6|CAB04704.1|  417|Caenorhabditis elegans Hypothetical
           protein T06G6.8 protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/104 (21%), Positives = 43/104 (41%)
 Frame = +1

Query: 157 RIPTIPTMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSCTASPKPHRRLQ 336
           R   +PT   W    T   + T+ + + ++T+  TTT +L       + T    P    +
Sbjct: 217 RSSKLPTSSVWKATTTPSDLPTKPSRTRSLTSTSTTTAKLPTT----TSTTFAAPQASTE 272

Query: 337 RARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRP 468
            +  T  +  A P  +P     ++  +IT   ++  S++  K P
Sbjct: 273 PSEATEALATATPADLPTKPSGREITTIT-GTRKLSSTSTTKLP 315


>Z74046-1|CAA98556.2|  178|Caenorhabditis elegans Hypothetical
           protein ZC116.1 protein.
          Length = 178

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +3

Query: 246 YYNPYYN--PRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVY 419
           YY PYY   P A   G    + +Q +A  A          ++ Q  A  +   QQ+ + Y
Sbjct: 25  YYTPYYYYYPTAAVAGTTG-VAQQTQAGGASQQAYAQQQPQQNQQYAQGT---QQQQQQY 80

Query: 420 YPQQPE 437
           YPQQ +
Sbjct: 81  YPQQTQ 86


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = +3

Query: 252 NPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYY--P 425
           NP  NP  +  G+       P   Q P    V  P   R    + + V Q +  V    P
Sbjct: 63  NPVQNPNKLSTGLPPMTMMLPPTVQEPLPTPVKTPPLPRPP-GNLNPVQQPQIPVQRTPP 121

Query: 426 QQPENPIFSPTQATELA 476
           Q P  P+  P Q T++A
Sbjct: 122 QCPPPPVPHPPQITQMA 138


>U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical
           protein C23H3.9a protein.
          Length = 503

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
 Frame = +1

Query: 166 TIPTMETWTPFPTA-----RAIVTEEAWS*AVTTILTTTPEL--WAVVWPRSCTASPKPH 324
           T  T  T TP PT          TE   +   T   TTTP++  WA +W  + TA PK +
Sbjct: 216 TATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTPKVNSWAKLW--TSTAEPKSY 273


>U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical
           protein C23H3.9b protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
 Frame = +1

Query: 166 TIPTMETWTPFPTA-----RAIVTEEAWS*AVTTILTTTPEL--WAVVWPRSCTASPKPH 324
           T  T  T TP PT          TE   +   T   TTTP++  WA +W  + TA PK +
Sbjct: 212 TATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTPKVNSWAKLW--TSTAEPKSY 269


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
 Frame = +1

Query: 166 TIPTMETWTPFPTA-----RAIVTEEAWS*AVTTILTTTPEL--WAVVWPRSCTASPKPH 324
           T  T  T TP PT          TE   +   T   TTTP++  WA +W  + TA PK +
Sbjct: 155 TATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTPKVNSWAKLW--TSTAEPKSY 212



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = +1

Query: 250 TILTTTPELWAVVWPRSCTASPKPHRRLQRARCTYLIVAARPLPIPATYRNK 405
           T   TTPE      PRS +   +P +RL     T    AA   PIP     K
Sbjct: 59  TTTETTPEAPTTSEPRSHSRDARPTQRLPLTWSTVTPTAAPSQPIPTATSRK 110


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical protein
            T28B8.3a protein.
          Length = 1838

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 214  IVTEEAWS*AVTTILTTTPELWAVVW 291
            I  EEAWS A+ TIL  T +L  V W
Sbjct: 1431 IEAEEAWSIAMETILDPTSDLRRVWW 1456


>L13200-7|AAA28189.1|  206|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 96
           protein.
          Length = 206

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 396 PQQENEVYYPQQPENPIFSPTQATELA 476
           PQQ+   Y PQQP +PI     A  +A
Sbjct: 6   PQQQQPGYQPQQPSHPIVGAGAAPTMA 32


>Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical
           protein W09D10.1 protein.
          Length = 495

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 225 GGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPS 335
           G  V +   N   N +++GGG A F      AA APS
Sbjct: 231 GSFVSANSQNAQQNAQSLGGGFADFSSAPTTAAAAPS 267


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 312 PEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPT 458
           P++ QAPS          +Q  A T  +PQ     + P QP + I  PT
Sbjct: 121 PQSVQAPSATPAGPLQAMQQAPAPTPGIPQMNQGAHLPPQP-HQIHQPT 168


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 139   ARYWCKRIPTIPTMETWTPFPTARAIVT 222
             A Y CK +P + T  TW P P  +A  T
Sbjct: 12338 ADYICKIVPNVETSRTW-PTPRTKATTT 12364


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 139   ARYWCKRIPTIPTMETWTPFPTARAIVT 222
             A Y CK +P + T  TW P P  +A  T
Sbjct: 12338 ADYICKIVPNVETSRTW-PTPRTKATTT 12364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,563,211
Number of Sequences: 27780
Number of extensions: 322194
Number of successful extensions: 1073
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)