Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_F20
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    35   0.015
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    30   0.42 
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   6.9  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.1  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
 Frame = +1

Query: 364 FLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITA 543
           F+S +V  GL++   + P N         +L  F    G+++G  + + S     II+ A
Sbjct: 102 FISLVVLFGLIMKPYSYPRN-------YIFLFLFTALEGLTLGTAITFFSA---RIILEA 151

Query: 544 LLGTTLVFVCFSAAAMLAERGSWXXXXXXXXXXXXSMSLMTLVNLFMQSH-FLYQAHLYL 720
           +  T  VFV  +A    + +  +            S+ L  L+  F+ S  F+  A    
Sbjct: 152 VFITLGVFVALTAFTFQS-KWDFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGF 210

Query: 721 GLMLMCGXVLFDTQLII 771
           G ++ CG +LFDT  I+
Sbjct: 211 GTLVFCGYILFDTYNIL 227


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = +1

Query: 208 TINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGA 387
           TI+ ++F        E   + ++ N+   + ++ + A+  V V++ TR    +   IVG 
Sbjct: 730 TIDIESFWTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKSDPYARVIVGN 789

Query: 388 GLMLMLIATPDN 423
            ++   + TP+N
Sbjct: 790 SVVARTVYTPNN 801


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 747 YXTAHEHEAKIKMSLVQE 694
           Y TAH +E K K+ L+QE
Sbjct: 291 YPTAHPYEIKTKLYLIQE 308


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = -1

Query: 644 NSVINVPPRNSQL--PRSASIAAAEKHTNTRV--VPSRAVIMIDGSTTLTYS--SRGPML 483
           N+ + +PPR +     R +++  +    ++ V  VPS +   ++  TT   S  SR PML
Sbjct: 318 NNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTTSVPSGMSRHPML 377

Query: 482 MPDVNPNPS 456
           M    P PS
Sbjct: 378 MNPSTPEPS 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,126
Number of Sequences: 5004
Number of extensions: 62271
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)