Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_F19
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 231 2e-61
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 231 2e-61
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.10
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.14
08_02_1278 - 25838146-25839411 32 0.31
03_05_0366 - 23505755-23506441 31 0.73
06_01_0017 + 189346-189561,189614-189905,190024-190043 31 0.96
04_01_0588 + 7657510-7657992,7658397-7658843 29 3.9
02_04_0457 + 23093020-23093343,23093798-23093806 29 3.9
03_01_0092 - 731069-731434,731569-733080 28 6.8
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182... 27 8.9
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 27 8.9
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 27 8.9
11_01_0411 - 3114959-3115000,3115504-3116703 27 8.9
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 8.9
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 231 bits (566), Expect = 2e-61
Identities = 108/188 (57%), Positives = 130/188 (69%)
Frame = +3
Query: 39 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 218
VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 219 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 398
+GQGAFGNMCRGGRMFAPTK WR+WH ARGH IE
Sbjct: 91 AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIET 150
Query: 399 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSXRLRAGKGKMRNRRRIXRKG 578
+PELPLV++D + I KT QA+ L+++ A++D K S +R GKGKMRNRR I RKG
Sbjct: 151 VPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKG 210
Query: 579 PLIIFNKD 602
PLI++ +
Sbjct: 211 PLIVYGTE 218
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 231 bits (566), Expect = 2e-61
Identities = 109/191 (57%), Positives = 131/191 (68%)
Frame = +3
Query: 30 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 209
+P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGG
Sbjct: 27 MPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGG 86
Query: 210 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 389
THR+GQGAFGNMCRGGRMFAPTK WRRWH ARGH
Sbjct: 87 THRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHR 146
Query: 390 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSXRLRAGKGKMRNRRRIX 569
IE +PE PLVV+D ++ I KT Q++ L+++ A++D K S +RAGKGKMRNRR I
Sbjct: 147 IEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYIN 206
Query: 570 RKGPLIIFNKD 602
RKGPLI++ +
Sbjct: 207 RKGPLIVYGTE 217
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 150 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 260
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.14
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 256 PPRHMLPKAP*PDLWVPPP 200
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>08_02_1278 - 25838146-25839411
Length = 421
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -2
Query: 479 APQEDDSLFGLVDLLDFVSYNQGKLGNLFNNVSSSL 372
A +E LF L+D+LD V+ +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.73
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 36 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 212
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 213 HRSGQGA 233
+ + + A
Sbjct: 168 NDNDEEA 174
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 30.7 bits (66), Expect = 0.96
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -2
Query: 473 QEDDS--LFGLVDLLDFVSYNQGKLGNLFNNVSSSLNERWDAGSSNGCCQGR--SPLSEV 306
+EDD L G ++ F + + N+ +S L+ +WDAGS + SPLS V
Sbjct: 75 KEDDKYVLHGWQKVMSFQARDSSN-SKAGNDSTSKLSFKWDAGSCSSASSSAMYSPLSAV 133
Query: 305 DATVPAP 285
A AP
Sbjct: 134 SAPAKAP 140
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +3
Query: 72 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 242
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 243 MCRGGRMFAPTKPWRRW 293
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 135 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 239
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -3
Query: 253 PRHMLPKAP*PDLWVPPPRTRGIRATARPVP 161
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
>12_02_0754 -
22817277-22817657,22817796-22817927,22818026-22818272,
22818473-22818909
Length = 398
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 500 DIRPCLEAPQEDDSLFGLVDLLDFVSYNQGKLGNLFNNVS 381
D P L+ + F V+ L V++NQG L N+ NVS
Sbjct: 248 DTTPDLDVVIDFIKCFPCVEKLYIVAFNQGNLKNIRRNVS 287
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 45 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 158
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 39 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 209
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 210 T 212
T
Sbjct: 215 T 215
>11_01_0411 - 3114959-3115000,3115504-3116703
Length = 413
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 241 LPKAP*PDLWVPPPRTRGIRATARPVPHDSALV-W*PASL 125
+P P P LW+P P A P+ H S+L W P +L
Sbjct: 276 VPCPPAPPLWLPSPSVPSSLALHVPLFHASSLERWSPTAL 315
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 129 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRMFAPTKP-WR 287
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,948,517
Number of Sequences: 37544
Number of extensions: 406809
Number of successful extensions: 1446
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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