Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_F19
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               264   4e-71
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)                  29   2.3  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   3.0  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.0  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   5.2  
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   5.2  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              28   6.9  
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 27   9.1  
SB_13054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)             27   9.1  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  264 bits (647), Expect = 4e-71
 Identities = 122/194 (62%), Positives = 141/194 (72%)
 Frame = +3

Query: 30  LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 209
           LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGG
Sbjct: 21  LPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGG 80

Query: 210 THRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 389
           THRSGQGAFGNMCRGGRMFAPTK WR+WH                          ARGH 
Sbjct: 81  THRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHR 140

Query: 390 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSXRLRAGKGKMRNRRRIX 569
           IEKI E+PLV++D ++ + KT  AV  L+ + A+ D+ K   S ++RAGKGKMRNRR + 
Sbjct: 141 IEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVM 200

Query: 570 RKGPLIIFNKDQGL 611
           RKGPLII+N DQGL
Sbjct: 201 RKGPLIIYNNDQGL 214


>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 214 WVPPPRTRGIRATARPVPHD 155
           W+PP RTR  R T  PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247


>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
          Length = 532

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 92  VQELEAALLREQGGWSPNQCRIMGYRTCCRPNSSCPWWW 208
           + E  A L+   G   P++  I+ +R CCR N  C W+W
Sbjct: 221 ITEAAAVLIVVNGTGVPDRL-IVSFRGCCRVN--CNWYW 256


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 144  TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 260
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 63   DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 188
            D+ NDV ++++  +  PY +     H T  E   TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 162 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 290
           G GR + R P   GGG  R   G +G M  GG    P   W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 563 TTTVAHFTLTSTKTXRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVSYNQ 414
           +T + HF     KT R +H+K        P E     GL+D+LD   + Q
Sbjct: 18  STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 57  RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 179
           RP       +SM K  R+PY  + +E GH+    S  T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +3

Query: 159 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 290
           WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 24  WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -3

Query: 259 RPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHD 155
           RPP H   + P PD WVP P  R        +P D
Sbjct: 250 RPPPHHDMRGP-PDQWVPGPEQRRDNMRGPGMPPD 283


>SB_13054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 470 EDDSLFG-LVDLLDFVSYNQGKLGNLFNNVSSSLNER 363
           E D + G  V+ LDFV +    +G L +N   SLN++
Sbjct: 220 ESDEVSGKFVEELDFVIHRNATIGGLESNTFGSLNKK 256


>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
          Length = 772

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = +3

Query: 102 SRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF-GNMCRGGRMFAP 272
           SRQPY   +  GH       G G      P +RGG   + G G   G    G R  AP
Sbjct: 110 SRQPYGPGRGRGHPNGRPMQGRGMQ----PGIRGGMMPQQGPGVRPGFPPAGSRQMAP 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,188,342
Number of Sequences: 59808
Number of extensions: 402804
Number of successful extensions: 1239
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)