Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_F18
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)               193   1e-49
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   60   1e-09
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  56   3e-08
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              37   0.017
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      36   0.040
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              34   0.091
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.28 
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score =  193 bits (471), Expect = 1e-49
 Identities = 94/128 (73%), Positives = 111/128 (86%), Gaps = 2/128 (1%)
 Frame = +1

Query: 166 SLHKSYQLSRFY--AKDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPK 339
           SL + +  SRF    K+++FGA+ RA MLQGVD LADAVAVT+GPKG+NVI+EQS+G PK
Sbjct: 45  SLGEGFSTSRFQNSPKELKFGAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPK 104

Query: 340 ITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 519
           ITKDGVTVAK +ELKDK+QNIGA+LVQ+VANNTNEEAGDGTTTATVLAR+IA EGF  +S
Sbjct: 105 ITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVS 164

Query: 520 KGANPIEI 543
           KGANP E+
Sbjct: 165 KGANPQEV 172


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
 Frame = +1

Query: 250 GVDILADAVAVTMGPKGRNVILEQSW--GSPKITKDGVTVAKGVELKDKFQNIGAKLVQN 423
           G   + D V  T+GPKG + IL+     G+ ++T DG T+ K + +     N  AK++  
Sbjct: 28  GAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILKSIGI----DNPAAKILVE 83

Query: 424 VANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVXAVKEKLK 591
           ++   ++E GDGTT+ TVL   + KE  + +S   +P  I  G   +V A ++ L+
Sbjct: 84  LSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 139


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 32/113 (28%), Positives = 57/113 (50%)
 Frame = +1

Query: 262 LADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTN 441
           +A  +  ++GPKG + ++    G   +T DG T+   +E+  +     AKL+  ++ + +
Sbjct: 42  VASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQI----AKLMVELSKSQD 97

Query: 442 EEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVXAVKEKLKGMS 600
            E GDGTT   VLA A+ +   + +  G +PI I  G  LA     E +  ++
Sbjct: 98  NEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDSIA 150


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 205 KDVRFGADVRALMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTV 363
           KD     ++R   +     +ADA+  ++GPKG + +++   G   IT DG T+
Sbjct: 17  KDKEKPQEIRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +1

Query: 439 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVXAVKEKLK 591
           ++E GDGTT+ TVLA  + KE  + +S   +P  I  G   +V A ++ L+
Sbjct: 7   DDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 57


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = +1

Query: 244 LQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGVELKDKFQNIGAKLVQN 423
           +     +ADAV  T+GP+G + ++    G   I+ DG T+   + L D   +  AK + +
Sbjct: 661 IDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATI---INLLD-IVHPAAKTLVD 716

Query: 424 VANNTNEE 447
           +A + + E
Sbjct: 717 IAKSQDAE 724


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 21/84 (25%), Positives = 40/84 (47%)
 Frame = +1

Query: 340 ITKDGVTVAKGVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKIS 519
           +T DG  + + +++K       AK +  ++   +EE GDGTT+  +LA          + 
Sbjct: 1   MTNDGNAILREIQVKHP----AAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLE 56

Query: 520 KGANPIEIRRGVMLAVXAVKEKLK 591
           +  +P +I     LA+  + + LK
Sbjct: 57  QQMHPTQIIAAYRLAMDDMIDILK 80


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = +1

Query: 370 GVELKDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRR 549
           GV+   + Q+  A L+  VA   ++  GDGTT+  ++   + K+    +S+G +P  +  
Sbjct: 165 GVQ-NSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTE 223

Query: 550 GVMLAVXAVKEKLK 591
           G  +A     E L+
Sbjct: 224 GFEVAKKKALEVLE 237


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +1

Query: 382 KDKFQNIGAKLVQNVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 561
           K + ++  AK +  ++   +EE GDGTT+  +LA          + +  +P +I     L
Sbjct: 208 KIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRL 267

Query: 562 AVXAVKEKLK 591
           A+  + + LK
Sbjct: 268 AMDDMIDILK 277


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 394 QNIGAKLVQNVANNTNEEAG-DGTTTATVLARAIAKEGFEKISKGANPIEIRRG 552
           Q +   LV N   N+ +  G DG+T  T+  +A+   GF   S   N    + G
Sbjct: 363 QGMNLSLVVNTTTNSVQLTGLDGSTNYTIAVQAVTSRGFGTPSLWVNATTKQEG 416


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,684,465
Number of Sequences: 59808
Number of extensions: 375720
Number of successful extensions: 885
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)