Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_F17
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    67   9e-12
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    66   3e-11
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    63   2e-10
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004     27   9.2  

>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 36/84 (42%), Positives = 49/84 (58%)
 Frame = +1

Query: 70  MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANXPGLLDLKGKAKFDA 249
           M LQE F+Q A   K L    ++   L LY  +KQATVGD + A  PG+   + +AK+DA
Sbjct: 1   MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTAR-PGIFAQRDRAKWDA 59

Query: 250 WHXLAGXSKEDAQKAYIEIVEGLI 321
           W  + G SKE+A   YI  V+ L+
Sbjct: 60  WKAVEGKSKEEAMSDYITKVKQLL 83


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 35/83 (42%), Positives = 49/83 (59%)
 Frame = +1

Query: 70  MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANXPGLLDLKGKAKFDA 249
           M LQE F++ A  VK L    ++   L LY  +KQATVGD +  + PG+   + +AK+DA
Sbjct: 1   MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDA 59

Query: 250 WHXLAGXSKEDAQKAYIEIVEGL 318
           W  + G SKE+A   YI  V+ L
Sbjct: 60  WKAVEGKSKEEAMSDYITKVKQL 82


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 34/84 (40%), Positives = 48/84 (57%)
 Frame = +1

Query: 70  MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANXPGLLDLKGKAKFDA 249
           M LQE+F++ A   K L    ++   L LY  +KQATVG       PG+ +LK + K+DA
Sbjct: 1   MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVTTGR-PGIFNLKDRYKWDA 59

Query: 250 WHXLAGXSKEDAQKAYIEIVEGLI 321
           W  + G SKE+A   YI  V+ L+
Sbjct: 60  WKAVEGKSKEEAMADYITKVKQLL 83


>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
          Length = 578

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 245 SNLALPFKSRRPGXLAGSASPTVACLKWAYKLRSWASVGRAFRFFTL 105
           +N ALP K   P      A+P+ A L WA    S+ +V R F F  L
Sbjct: 389 TNEALP-KELHPVYSMFIATPSAASLAWAAIYGSFDAVARTFFFMAL 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,408,957
Number of Sequences: 37544
Number of extensions: 252739
Number of successful extensions: 486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)