Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_F16
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    28   1.3  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    28   1.3  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.3  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   3.0  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   4.0  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    25   6.9  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   6.9  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   9.1  

>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 313 RREELLHAKSEDDVSISLYYNRKTNKVSLESLHGGHLKSVSWGLKDHEKGTLLLVASANG 492
           RR++L   K E D+S   YY  K+ K     L+   ++ ++   +D E+   +L  S  G
Sbjct: 50  RRDQLSFYKDEKDISAVAYYKEKSPKTFFLYLNEKIIRLIATSNEDAEEWVHVL-RSTTG 108

Query: 493 VR 498
            R
Sbjct: 109 YR 110


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 463 TLLLVASANGVRLYAGCVPLHWHSMSGTYDLLDILRDQKTKLYHEENAPV 612
           T + V   +G   ++     HW+S SGT DL   L  + + +Y   +A V
Sbjct: 316 TWIDVEKESGPSPHSQSTSTHWYSESGTLDLFIFLGPKASDVYESYSALV 365


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 369 LQQENKQSILGESTRRPSKICFVGSQRS*KRNTFVGGFGKRRQTIR 506
           ++  N +S+   S RRPS I  +G++ S K   F        QT+R
Sbjct: 231 IESANMESLSIPSRRRPSSIAPIGTRPSRKEIAFSNSSTPTDQTLR 276


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -1

Query: 195 HRHHSKDREDSCAHGRNRHVALLLITLFPPI*NPA 91
           H HH K +  S  H  N   ++ + T   P   PA
Sbjct: 557 HHHHKKSKSSSSKHKENDKASVSITTTTTPSITPA 591


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 99  FKLAGIK*LAITRHGDSGHVRTNLLCPCC 185
           FK AGI  LA+  HG    V T ++C  C
Sbjct: 637 FKDAGITNLALLNHGKLHGVLTKIVCFIC 665


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 284 SIATSPRSRADEAAAINSSVASRSIVREFTIATTARTEK 168
           ++AT+P+S AD  A  +  V S++ V   T +TT +T K
Sbjct: 255 NVATAPKSWADLIARNHPDVKSQASVSS-TASTTGQTVK 292


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 160 RTWPESPCRVIANHFIPA 107
           RT P S C ++ NH +P+
Sbjct: 5   RTCPSSDCGILCNHSVPS 22


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 22/81 (27%), Positives = 34/81 (41%)
 Frame = +1

Query: 325 LLHAKSEDDVSISLYYNRKTNKVSLESLHGGHLKSVSWGLKDHEKGTLLLVASANGVRLY 504
           LL + S+   SIS Y+      + + S+  G +     G  D   GT+L V  A     Y
Sbjct: 161 LLLSMSDSMSSISYYFLLSLVLLYIASISLGRIYCGMHGFMDVSTGTILGVTLAIFQWKY 220

Query: 505 AGCVPLHWHSMSGTYDLLDIL 567
           A      W S S +  +L ++
Sbjct: 221 ADFFHNVWSSSSTSVPILSVV 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,228
Number of Sequences: 5004
Number of extensions: 52021
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)