Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_F16
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 36 0.036
10_01_0206 - 2206359-2209142 33 0.19
12_02_0587 + 20835741-20836115,20836183-20836218,20836409-208366... 30 1.8
05_05_0077 + 22226326-22226441,22226527-22226601,22227619-222277... 30 1.8
12_02_0423 + 18944555-18945226,18945309-18945545 29 4.1
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 29 4.1
09_04_0514 - 18236061-18237392 28 5.4
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 9.4
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 35.5 bits (78), Expect = 0.036
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 466 LLLVASANGVRLYA-GCVPLHWHSMSGTYDLLDILRDQKTK 585
LLL AN VR GC PLHW ++ G Y++ +L TK
Sbjct: 191 LLLFMDANQVRQDKNGCTPLHWAAIRGNYEVCTVLVHAGTK 231
>10_01_0206 - 2206359-2209142
Length = 927
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 526 WHSMSGTYDLLDILRDQKTKLYHEEN 603
W S+S TY L+++L+ +L+HEEN
Sbjct: 231 WVSVSQTYSLMELLKKLSVQLFHEEN 256
>12_02_0587 +
20835741-20836115,20836183-20836218,20836409-20836617,
20837402-20837498,20837977-20838046,20838224-20838281,
20838914-20839734,20839780-20840121,20840224-20841227
Length = 1003
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 624 AVYFDWSVFFVIQFRLLVPQYIQKVISPGHRMPMEWNA 511
A + SV F++ LLV Q ++SPG +P+E N+
Sbjct: 281 ARFITLSVIFLLSIPLLVASVPQDILSPGSSIPVEDNS 318
>05_05_0077 +
22226326-22226441,22226527-22226601,22227619-22227781,
22227867-22228166
Length = 217
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -2
Query: 509 PAYSLTPFAEATNKSVPFS*SLRPHETDFRW-PPCRL--SKD 393
PAY FA+A K VP++ S P ++W PP L SKD
Sbjct: 168 PAYHPAAFAQAGGKYVPYATSYAPPAAFWQWIPPTSLDTSKD 209
>12_02_0423 + 18944555-18945226,18945309-18945545
Length = 302
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 213 HSEGVHHRHHSKDREDSCAHGRNRHVA 133
H +G HH HH++ + + A R R ++
Sbjct: 150 HDDGRHHHHHNQAVQSAAARERRRRIS 176
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 141 GDSGHVRTNLLCPCCGGDGE 200
G GH+RTN LCP G D E
Sbjct: 1389 GQLGHMRTNKLCPKYGEDPE 1408
>09_04_0514 - 18236061-18237392
Length = 443
Score = 28.3 bits (60), Expect = 5.4
Identities = 26/116 (22%), Positives = 46/116 (39%)
Frame = +1
Query: 166 IFSVLAVVAMVNSLTMDREATEELIAAASSARDRGEVAILVRGPHGKSARREELLHAKSE 345
++ V A A V + R + ++A AS +V L G H ++ + +
Sbjct: 196 LYRVPAHAAPVTCVACGRGGCDAVVATASMD-GTCKVWTLKDGSHLRTLTLPCTAFSLTL 254
Query: 346 DDVSISLYYNRKTNKVSLESLHGGHLKSVSWGLKDHEKGTLLLVASANGVRLYAGC 513
D ++ L+ +V + SL + S SW + L+ V ANG + C
Sbjct: 255 DHLAARLFAGGSDGRVHVASLSPAAITSSSWHASGNTNAALVGVGMANGSKNLVTC 310
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -1
Query: 213 HSEGVHHRHHSKDR-EDSCAHGRNRH 139
H +G HHRHH R +HG + H
Sbjct: 530 HQKGRHHRHHHDHRHRHGHSHGDHHH 555
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,506,678
Number of Sequences: 37544
Number of extensions: 372015
Number of successful extensions: 1204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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