Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_F16
(636 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38749| Best HMM Match : SASP_gamma (HMM E-Value=4.1) 29 2.4
SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_19818| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.3
SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09) 28 7.3
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_26059| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09) 27 9.7
SB_16707| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09) 27 9.7
SB_10859| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_7003| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-09) 27 9.7
SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2) 27 9.7
SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6) 27 9.7
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 27 9.7
SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.7
>SB_38749| Best HMM Match : SASP_gamma (HMM E-Value=4.1)
Length = 155
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 241 AAASSARDRGEVAILVRGPHGKSARREELLHAKSEDDVSISLYYNRKTNKVSLESLHG 414
AAA++ + R + RGP G ++L + DV+I N + V E+ G
Sbjct: 79 AAANAKKARATTSTRCRGPRGPEQNVDDLTRQNRQQDVNIDKQDNNEDAPVGAENGEG 136
>SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1082
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 102 KLAGIK*LAITRHGDS--GHVRTNLLCPCCGGDGELPHYGPRS 224
K+ G+K L I++H +S GH N +CP G E G R+
Sbjct: 785 KVDGLKNLNISQHDNSELGHSSPNYVCPSLGQSREESFQGQRT 827
>SB_19818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 460 GTLLLVASANGVRLYAGCVPLHWHSMSGTYDLLDI 564
G L+ VA V G PLHW +G Y L ++
Sbjct: 72 GALVQVAGTTSVLDDRGYTPLHWACFNGIYPLCNL 106
>SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1025
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 613 RLERFLRDTISSSGPSVYPEGH-KSRTSNANGVERNRRIV*RRLPKPPTKVFLFH 452
R + FL D SS P + H S S+ + V + + +PKPP K++L+H
Sbjct: 406 RYDNFL-DLAFSSKPGLVNACHVTSGLSDHSAVLFEVDLAPKYIPKPPRKIYLYH 459
>SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2504
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 299 CGPRTSIATSPRSRADEAAAINSSVASRSIVREFTIATTARTEKIRAH 156
CGP+T+ T R +A +AA S ++ +VR T I +H
Sbjct: 1885 CGPQTNAHTPKRIKAKKAAEPLSVFGTQIVVRTERKVEAMETSAIESH 1932
>SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09)
Length = 748
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 613 RLERFLRDTISSSGPSVYPEGH-KSRTSNANGVERNRRIV*RRLPKPPTKVFLFH 452
R + FL D SS P + H S S+ + V + + +PKPP K++L+H
Sbjct: 309 RYDNFL-DLAFSSKPGLVNACHVTSGLSDHSAVLFEVDLAPKYIPKPPRKIYLYH 362
>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1994
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 293 PRTSIATSPRSRADEAAAINSSVASRSI 210
P TS+ATS S+A + +NSS AS ++
Sbjct: 261 PHTSLATSSNSQALKTETLNSSSASPAV 288
>SB_26059| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09)
Length = 334
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 613 RLERFLRDTISSSGPSVYPEGH-KSRTSNANGVERNRRIV*RRLPKPPTKVFLFH 452
R + FL D SS P + H S S+ + V + + +PKPP K++L+H
Sbjct: 222 RYDSFL-DLAFSSKPGLVNACHVTSGLSDHSAVLFEVDLAPKYIPKPPRKIYLYH 275
>SB_16707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 487 NGVRLYAGCVPLHWHSMSGTYDLL 558
+GVR GC P+ W + G YD L
Sbjct: 109 DGVRCLVGCGPVAWAMVFGYYDRL 132
>SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)
Length = 843
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 613 RLERFLRDTISSSGPSVYPEGH-KSRTSNANGVERNRRIV*RRLPKPPTKVFLFH 452
R + FL D SS P + H S S+ + V + + +PKPP K++L+H
Sbjct: 241 RYDSFL-DLAFSSKPGLVNACHVTSGISDHSAVLFEVDLAPKYIPKPPRKIYLYH 294
>SB_10859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 138 HGDSGHVRTNLLCPCCGGDGELPHYGPRSNRRINRSCFVG 257
H +++ + CP C D E P P+ I R C +G
Sbjct: 13 HSFHENIQDEISCPICYEDFEEPKCLPKCAHNICRECLLG 52
>SB_7003| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-09)
Length = 378
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 613 RLERFLRDTISSSGPSVYPEGH-KSRTSNANGVERNRRIV*RRLPKPPTKVFLFH 452
R + FL D SS P + H S S+ + V + + +PKPP K++L+H
Sbjct: 235 RYDSFL-DLAFSSKPGLVNACHVTSGLSDHSAVLFEVDLAPKYIPKPPRKIYLYH 288
>SB_435| Best HMM Match : zf-CCHC (HMM E-Value=2)
Length = 913
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Frame = -1
Query: 192 RHHSKDREDSCAHGRNRHVALLLITLFPPI*NPAIFFSV-----SRNCMRNACANYSRTT 28
R S + + GR L PPI P S+ R+C R+ YSR+
Sbjct: 110 RADSTTSQSTTVEGRQCSRIGCLACCLPPITLPEAISSLYHGEMPRHCPRSPNKRYSRSP 169
Query: 27 RLTKLIGRP 1
R +IGRP
Sbjct: 170 RCILMIGRP 178
>SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 251 RRPVTEEKSRYWCVDRTGRVQDARSYSTLRAKMMYPYRC-ITTGKQ 385
R+P+ E++ RY C D ++D +S + +Y ++ I GK+
Sbjct: 14 RKPLDEKRKRYKCGDHYVTLKDVLPWSKYHQENLYYFKSRIEKGKE 59
>SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6)
Length = 291
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 613 RLERFLRDTISSSGPSVYPEGH-KSRTSNANGVERNRRIV*RRLPKPPTKVFLFH 452
R + FL D SS P + H S S+ + V + + +PKPP K++L+H
Sbjct: 24 RYDSFL-DLAFSSKPGLVNACHVTSGLSDHSAVLFEVDLAPKYIPKPPRKIYLYH 77
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 262 DRGEVAILVRGPHGKSARREELLHAKSEDDVSISLYYNRK 381
D+ E L H ++ E L A D+V+ISL+Y RK
Sbjct: 440 DKNEYKSLCEFIHEQAVFGEGLRTASGADEVAISLFYARK 479
>SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1009
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 613 RLERFLRDTISSSGPSVYPEGH-KSRTSNANGVERNRRIV*RRLPKPPTKVFLFH 452
R + FL D SS P + H S S+ + V + + +PKPP K++L+H
Sbjct: 279 RYDSFL-DLAFSSKPGLVNACHVTSGLSDHSAVLFEVDLAPKYIPKPPRKIYLYH 332
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,066,298
Number of Sequences: 59808
Number of extensions: 421344
Number of successful extensions: 1334
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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