Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_F16
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 33 0.23
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer... 31 0.69
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ... 31 0.69
U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical pr... 31 0.91
U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 29 2.1
AC006614-1|AAF39762.2| 472|Caenorhabditis elegans Hypothetical ... 28 4.9
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 28 6.4
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z72508-9|CAA96639.2| 410|Caenorhabditis elegans Hypothetical pr... 27 8.5
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -3
Query: 631 FRCRIFRLERFLRDTISSSGPSVYPEGHKSRTSNANGVE 515
F R R+LR T+SSSGPS++ + H + S+ N E
Sbjct: 11 FPSMALRKTRYLRQTVSSSGPSIFNQ-HSRKLSSENHKE 48
>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform b protein.
Length = 1051
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 211 MDREATEELIAAASSARDRGEVAILVRGPHGK 306
M E T EL+A DR ++++V+GP GK
Sbjct: 277 MGNEETHELLAILDFNNDRKRMSVIVKGPDGK 308
>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform a protein.
Length = 1222
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 211 MDREATEELIAAASSARDRGEVAILVRGPHGK 306
M E T EL+A DR ++++V+GP GK
Sbjct: 448 MGNEETHELLAILDFNNDRKRMSVIVKGPDGK 479
>U23527-5|AAC46572.2| 915|Caenorhabditis elegans Hypothetical protein
K09E2.1 protein.
Length = 915
Score = 30.7 bits (66), Expect = 0.91
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +1
Query: 379 KTNKVSLESLHGGHLKSVSWGLKDHEKGTLLLVASANGVRLYAGCVPLHWHS----MSGT 546
++++V L G H++ + W H K + LL ++ VR G V LH+ S +
Sbjct: 764 RSHRVGLIQFAGPHIQKMEWSFDTHSKNSQLL-SAIRSVRHLTGVV-LHFQSGTTYIGAA 821
Query: 547 YDLLDILRDQKTKLYHEENAPVEI 618
+L IL D + K H E + I
Sbjct: 822 LELSLILLDSRRK--HTETTVILI 843
>U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical
protein C33G8.12 protein.
Length = 358
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 168 LLCPCCGGDGELPHYG 215
+LC CG DG PHYG
Sbjct: 12 MLCLVCGADGSEPHYG 27
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 366 VLQQENKQSILGESTRRPSKICFVGSQRS*KRNTFVGGFGKRRQTIRRLRS 518
V++ + S +TR+ K+ GS + N+ + GF K++ RR+RS
Sbjct: 922 VIETNSHNSFAFYNTRKDMKVVENGSHKFGTLNSAIRGFTKKKTDTRRIRS 972
>AC006614-1|AAF39762.2| 472|Caenorhabditis elegans Hypothetical
protein C34H3.1 protein.
Length = 472
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 379 KTNK--VSLESLHGGHLKSVSWGLKDHEKGTLLLVASANGVRLYAGCVPLHWHSMSGTY 549
+TN+ +SL+S H + S L DHE TL+ A G+ G H S+SG Y
Sbjct: 103 QTNRGDLSLQSFHE-YRNSRLHKLPDHEFATLISYKYAGGLAYVNGMCSSHSVSLSGFY 160
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 213 HSEGVHHRHHSKDREDSCAHGRNRH 139
H RHH++DR H RNRH
Sbjct: 97 HQNQDRSRHHNQDRNRRQNHDRNRH 121
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 213 HSEGVHHRHHSKDREDSCAHGRNRH 139
H RHH++DR H RNRH
Sbjct: 941 HQNQDRSRHHNQDRNRRQNHDRNRH 965
>Z72508-9|CAA96639.2| 410|Caenorhabditis elegans Hypothetical
protein F28H7.8 protein.
Length = 410
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +1
Query: 319 EELLHAKSEDDVSISLYYNRKTN 387
E L+++ +E+D++I+LYY++ N
Sbjct: 306 ELLMYSHNENDITITLYYSKNKN 328
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,490,995
Number of Sequences: 27780
Number of extensions: 302071
Number of successful extensions: 970
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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